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[184784_at]

Description C14A11.5 /REP_DB=WormBase Gene ID /WP=CE08153 /TR=O02136 /GB=AAB52872.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 24.6
(0.6)
A 		6.6
(-3)
A 		11
(-2.1)
A 		36.2
(3)
A 		30
B 51.8
(3)
A 		13
(-2)
A 		4.8
(-3)
A 		49.2
(2.7)
A 		47
C 30.6
(-1.7)
A 		9.4
(-3)
A 		9.2
(-3)
A 		110.1
(3)
A 		101
avr 35.7
(-0.1) 		9.7
(-2.9) 		8.3
(-3) 		65.2
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 7.6
(-2.7)
A 		40.7
(2.1)
A 		46.6
(3)
A 		5.6
(-3)
A 		7.9
(-2.7)
A 		9.9
(-2.4)
A 		41
B 12.3
(-2)
A 		60.4
(3)
A 		36.1
(0.5)
A 		6.4
(-2.6)
A 		3
(-3)
A 		36
(0.4)
A 		57
C 4.5
(-3)
A 		26.3
(0.3)
A 		10.6
(-2.1)
A 		44.3
(3)
A 		5.1
(-2.9)
A 		7.1
(-2.6)
A 		40
avr 8.1
(-2.5) 		42.5
(3) 		31.1
(1.2) 		18.8
(-0.8) 		5.3
(-3) 		17.7
(-1) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 8.9
(3)
A 		1.4
(-3)
A 		2.9
(-1.8)
A 		5.3
(0.1)
A 		8
B 16.5
(3)
A 		3.2
(-2.2)
A 		1.1
(-3)
A 		10.5
(0.7)
A 		15
C 10.1
(-0.2)
A 		2.7
(-3)
A 		3.2
(-2.8)
A 		18.6
(3)
A 		16
avr 11.8
(3) 		2.4
(-3) 		2.4
(-3) 		11.5
(2.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.4
(-3)
A 		14.5
(3)
A 		10.2
(1)
A 		1.4
(-3)
A 		2.4
(-2.5)
A 		2.4
(-2.5)
A 		13
B 4.3
(-2)
A 		20.1
(3)
A 		8.8
(-0.6)
A 		1.7
(-2.8)
A 		1.2
(-3)
A 		13.4
(0.9)
A 		19
C 1.7
(-3)
A 		8
(2.3)
A 		2.7
(-2.2)
A 		8.9
(3)
A 		1.7
(-3)
A 		2.4
(-2.4)
A 		7
avr 2.5
(-2.7) 		14.2
(3) 		7.2
(-0.4) 		4
(-1.9) 		1.8
(-3) 		6.1
(-0.9) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184784_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18156
Sequence Type Exemplar sequence
Representative Public ID C14A11.5 NCBI
Target Description C14A11.5 /REP_DB=WormBase Gene ID /WP=CE08153 /TR=O02136 /GB=AAB52872.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076087(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076087 NCBI Caenorhabditis elegans C14A11.5 (C14A11.5) mRNA, complete cds. 11/11 None
SNAP00000039982 ENSEMBL cdna:SNAP chromosome:CEL140:X:2805068:2807356:-1 11/11 None
GENEFINDER00000039993 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2805068:2807356:-1 11/11 None
C14A11.5 ENSEMBL cdna:known chromosome:CEL140:X:2805068:2807356:-1 gene:C14A11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2805067-2807356(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14A11.5
Entrez Gene 182591 Entrez gene
SwissProt O02136 EMBL-EBI
WormBase CE08153 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52872 Hypothetical protein C14A11.5 [Caenorhabditis elegans] ref|NP_508488.1| C14A11.5 [Caenorhabditis elegans] 0.0
blast CAE58832 Hypothetical protein CBG02044 [Caenorhabditis briggsae] 2.0E-11
Sequence
Target Sequence 
>C. ELEGANS:184784_AT
aagcgtcagaggttgccaatgcacataaaaaatggttggagcaaaaatcgggaagtagtc
gacaagctgagcttgctgcaaatgctttgaggcttttacaagaacataacacgttgccga
tgacagaacattctaaaaaggtctctggcggtttatcagcatcagttggcacaaattttt
atggaaattgtaaggaatctataagatcaagagttgaagaaaaatacaaccaattattca
ttgatcgaattcgagaactgacggaaaagctggaatggtcttcagaatcgccagaaaaga
accgacagtttaccaaaactgacgagttgacagttgtaaaagcgcacattgtcagaaagt
tggattactggaaaaagtctactcaaccgcaagctgctcattacactgaaatgtatcaac
ttcttttcgaaaaatgcggaccctctatctcggacgtgatcatgaattacatgcgatatg
acacactcccagaagctgagttcgaacaaactttgcttctgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCGTCAGAGGTTGCCAATGCACA 55 149 797 Antisense
GAACATAACACGTTGCCGATGACAG 285 351 898 Antisense
AGGTCTCTGGCGGTTTATCAGCATC 117 57 935 Antisense
GAATGGTCTTCAGAATCGCCAGAAA 190 333 1069 Antisense
AAAAAGTCTACTCAACCGCAAGCTG 515 127 1168 Antisense
ACCGCAAGCTGCTCATTACACTGAA 311 89 1182 Antisense
TCGAAAAATGCGGACCCTCTATCTC 461 601 1223 Antisense
CCCTCTATCTCGGACGTGATCATGA 537 259 1237 Antisense
TACATGCGATATGACACACTCCCAG 95 645 1264 Antisense
GACACACTCCCAGAAGCTGAGTTCG 677 365 1276 Antisense
GTTCGAACAAACTTTGCTTCTGCAA 500 441 1296 Antisense
Sequence Source Affymetrix Proprietary Database