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[184783_at]

Description E03H12.9 /REP_DB=WormBase Gene ID /WP=CE09148 /TR=O02131 /GB=AAC47984.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 6
(-3)
A 		28.6
(-1.7)
A 		39.5
(-1)
A 		108.7
(3)
A 		103
B 14.1
(-1.4)
A 		29.8
(3)
A 		8.5
(-3)
A 		27.3
(2.3)
A 		21
C 30.5
(-1.3)
A 		22.3
(-2.2)
A 		14.1
(-3)
A 		72.1
(3)
A 		58
avr 16.9
(-3) 		26.9
(-1.9) 		20.7
(-2.6) 		69.4
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 20.2
(2.4)
A 		10.4
(-1.3)
A 		12.1
(-0.6)
A 		9.2
(-1.7)
A 		21.8
(3)
A 		5.8
(-3)
A 		16
B 8.5
(-2.8)
A 		56.8
(3)
A 		13.4
(-2.2)
A 		26.3
(-0.7)
A 		27.7
(-0.5)
A 		7
(-3)
A 		50
C 8
(-2.8)
A 		13.4
(-1.8)
A 		6.8
(-3)
A 		27.6
(0.9)
A 		14.3
(-1.6)
A 		39.2
(3)
A 		32
avr 12.2
(-2.5) 		26.9
(3) 		10.8
(-3) 		21
(0.8) 		21.3
(0.9) 		17.3
(-0.6) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.2
(-3)
A 		6.2
(-1.2)
A 		10.3
(0.5)
A 		15.9
(3)
A 		14
B 4.5
(-0.2)
A 		7.4
(3)
A 		2
(-3)
A 		5.8
(1.2)
A 		5
C 10.1
(1.3)
A 		6.4
(-1.8)
A 		4.9
(-3)
A 		12.2
(3)
A 		7
avr 5.6
(-3) 		6.7
(-1.8) 		5.7
(-2.9) 		11.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 3.7
(-0.3)
A 		3.7
(-0.3)
A 		2.6
(-1.6)
A 		2.3
(-2)
A 		6.6
(3)
A 		1.4
(-3)
A 		5
B 2.9
(-2.9)
A 		18.9
(3)
A 		3.2
(-2.8)
A 		7
(-1.4)
A 		11.2
(0.2)
A 		2.6
(-3)
A 		16
C 3
(-2.3)
A 		4.1
(-1.7)
A 		1.7
(-3)
A 		5.5
(-1)
A 		4.6
(-1.5)
A 		13.1
(3)
A 		11
avr 3.2
(-2.3) 		8.9
(3) 		2.5
(-3) 		4.9
(-0.8) 		7.5
(1.7) 		5.7
(0) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184783_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11236
Sequence Type Exemplar sequence
Representative Public ID E03H12.9 NCBI
Target Description E03H12.9 /REP_DB=WormBase Gene ID /WP=CE09148 /TR=O02131 /GB=AAC47984.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068294(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068294 NCBI Caenorhabditis elegans E03H12.9 (E03H12.9) mRNA, complete cds. 11/11 None
SNAP00000020613 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4990245:4991314:-1 11/11 None
GENEFINDER00000020622 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4990245:4991423:-1 9/11 None
E03H12.9 ENSEMBL cdna:known chromosome:CEL140:IV:4990245:4991423:-1 gene:E03H12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4990250-4991429(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E03H12.9
Entrez Gene 184031 Entrez gene
SwissProt O02131 EMBL-EBI
WormBase CE09148 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500695 E03H12.9 [Caenorhabditis elegans] gb|AAC47984.1| Hypothetical protein E03H12.9 [Caenorhabditis elegans] 1.0E-119
blast NP_500695 E03H12.9 [Caenorhabditis elegans] gb|AAC47984.1| Hypothetical protein E03H12.9 [Caenorhabditis elegans] 1.0E-108
blast NP_500693 E03H12.2 [Caenorhabditis elegans] gb|AAC47978.1| Hypothetical protein E03H12.2 [Caenorhabditis elegans] 6.0E-26
blast NP_500692 E03H12.3 [Caenorhabditis elegans] gb|AAC47977.1| Hypothetical protein E03H12.3 [Caenorhabditis elegans] 9.0E-25
blast NP_500693 E03H12.2 [Caenorhabditis elegans] gb|AAC47978.1| Hypothetical protein E03H12.2 [Caenorhabditis elegans] 2.0E-24
blast NP_500693 E03H12.2 [Caenorhabditis elegans] gb|AAC47978.1| Hypothetical protein E03H12.2 [Caenorhabditis elegans] 3.0E-24
blast NP_500692 E03H12.3 [Caenorhabditis elegans] gb|AAC47977.1| Hypothetical protein E03H12.3 [Caenorhabditis elegans] 3.0E-23
Sequence
Target Sequence 
>C. ELEGANS:184783_AT
tggggatacccggattctggaactgaaaattgtgtttctcactcttcagttatcacattt
gaaatatgtatgaatttgtgtttgaacagttatccgtgcatgatagcgtatggaaacgaa
aacagttgtactttttgtaacgctcatgttatcaattccataacacaatcggattcttca
tctggttcaaaaattggaataaaagttgacccccagaatgcgtgccccaaagatgttcaa
actacagaatacgttaaaacggtaggtatctcacgacttgaaggaacagaaatggctcga
accgttactccactttcaatattctcattctcatattcatttcaggatggcaatgatggc
tacacattgtcattttccaatccatcttggacaatcacataccaacaaaagtgtattgat
aatacatggactatgtttttgacgccagccgtctctaatgtgcatgaaagtgcaccactt
gcaagcgtggatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGGATACCCGGATTCTGGAACTG 566 521 85 Antisense
GTGTTTCTCACTCTTCAGTTATCAC 82 487 116 Antisense
ATAAAAGTTGACCCCCAGAATGCGT 205 19 283 Antisense
ATGCGTGCCCCAAAGATGTTCAAAC 251 41 302 Antisense
AAACGGTAGGTATCTCACGACTTGA 193 59 341 Antisense
AGAAATGGCTCGAACCGTTACTCCA 242 71 372 Antisense
GTTACTCCACTTTCAATATTCTCAT 140 447 388 Antisense
GATGGCTACACATTGTCATTTTCCA 339 407 439 Antisense
TGGACTATGTTTTTGACGCCAGCCG 665 545 511 Antisense
CCAGCCGTCTCTAATGTGCATGAAA 347 273 529 Antisense
AGTGCACCACTTGCAAGCGTGGATC 121 61 553 Antisense
Sequence Source Affymetrix Proprietary Database