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[184782_at]

Description F19G12.7 /REP_DB=WormBase Gene ID /WP=CE07090 /TR=Q19594 /GB=AAG24067.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 19      6grp_cgc > 75      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 3.4
(-3)
A 		24.8
(0.2)
A 		4.9
(-2.8)
A 		43.3
(3)
A 		40
B 15.8
(3)
A 		2.9
(-3)
A 		4.2
(-2.4)
A 		4.6
(-2.2)
A 		13
C 17.9
(-2.7)
A 		21.6
(0.5)
A 		17.6
(-3)
A 		24.5
(3)
A 		7
avr 12.4
(-1.6) 		16.4
(-0) 		8.9
(-3) 		24.1
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 2
(-3)
A 		3.7
(-2.6)
A 		4.6
(-2.4)
A 		24.4
(2.1)
A 		28.3
(3)
A 		8.1
(-1.6)
A 		26
B 4.8
(-2.4)
A 		7.9
(-1.6)
A 		27.4
(3)
A 		3.7
(-2.6)
A 		12.8
(-0.5)
A 		2.1
(-3)
A 		25
C 7
(1.1)
A 		8.7
(2.4)
A 		5.9
(0.2)
A 		9.5
(3)
A 		1.7
(-3)
A 		3.4
(-1.7)
A 		8
avr 4.6
(-2.9) 		6.8
(-1.6) 		12.6
(2) 		12.5
(1.9) 		14.3
(3) 		4.5
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.2
(-3)
A 		5.4
(1.9)
A 		1.3
(-2.9)
A 		6.3
(3)
A 		5
B 5
(3)
A 		0.7
(-3)
A 		1
(-2.6)
A 		1
(-2.6)
A 		4
C 5.9
(2.1)
A 		6.2
(3)
A 		6.1
(2.7)
A 		4.1
(-3)
A 		2
avr 4
(2.5) 		4.1
(3) 		2.8
(-3) 		3.8
(1.6) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.3
(-2.3)
A 		1
(-2.6)
A 		6.2
(1.3)
A 		8.5
(3)
A 		2
(-1.8)
A 		8
B 1.7
(-2.1)
A 		2.6
(-1.1)
A 		6.6
(3)
A 		1
(-2.8)
A 		5.2
(1.6)
A 		0.8
(-3)
A 		6
C 2.6
(2.7)
A 		2.7
(3)
A 		1.5
(-0.4)
A 		1.9
(0.7)
A 		0.6
(-3)
A 		1.1
(-1.6)
A 		2
avr 1.6
(-2.5) 		2.2
(-1.5) 		3
(-0.1) 		3
(-0.1) 		4.8
(3) 		1.3
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184782_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18115
Sequence Type Exemplar sequence
Representative Public ID F19G12.7 NCBI
Target Description F19G12.7 /REP_DB=WormBase Gene ID /WP=CE07090 /TR=Q19594 /GB=AAG24067.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075864(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075864 NCBI Caenorhabditis elegans Activated in Blocked Unfolded protein response family member (abu-2) (abu-2) mRNA, complete cds. 11/11 None
SNAP00000018681 ENSEMBL cdna:SNAP chromosome:CEL140:X:1408831:1410647:-1 11/11 None
GENEFINDER00000018690 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1408831:1410647:-1 11/11 None
F19G12.7 ENSEMBL cdna:known chromosome:CEL140:X:1408831:1410647:-1 gene:F19G12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1408830-1410647(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol abu-2
Ensembl F19G12.7
Entrez Gene 184695 Entrez gene
SwissProt Q19594 EMBL-EBI
WormBase CE07090 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.22268.1.S1_X_AT similar to keratin associated protein 10-7 cfa
CANINE_2:CFAAFFX.22273.1.S1_S_AT similar to keratin associated protein 10-7 cfa
CANINE_2:CFAAFFX.22273.1.S1_X_AT similar to keratin associated protein 10-7 cfa
CANINE_2:CFAAFFX.23307.1.S1_AT similar to keratin associated protein 10-7 cfa
CHICKEN:GGAAFFX.5801.1.S1_AT similar to keratin associated protein 18-4; keratin associated protein 18.4 gga
Protein Similarities
Method ID Description E-Value
blast AAG24067 Activated in blocked unfolded protein response protein 2 [Caenorhabditis elegans] ref|NP_508265.1| Activated in Blocked Unfolded protein response family member (abu-2) [Caenorhabditis elegans] 6.0E-56
blast CAB54984 Hypothetical protein Y105C5A.5 [Caenorhabditis elegans] ref|NP_502874.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-78) [Caenorhabditis elegans] 2.0E-27
blast CAB54983 Hypothetical protein Y105C5A.4 [Caenorhabditis elegans] ref|NP_502873.1| Activated in Blocked Unfolded protein response family member (abu-5) [Caenorhabditis elegans] 2.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 2.3E-41
Sequence
Target Sequence 
>C. ELEGANS:184782_AT
tcacaatgtctacagccagctgctcctcagtgtcagcagtgccaaaatacatgccagcaa
tttgctccagtttgcgagcaacaatgtgcttcgctatgtcatcagccatcagctccacaa
tgccagcagtgtcagaatacttgccagcaatttgctccagtttgtgagcaacaatgtgct
ccacaatgctatcagccatcagctccacagtgccagcagtgccaagcttcatgccaacaa
actcaacagtgccaacaacagtgcattccacaatgtcagcagccatcagctccccagtgc
cagcaatgtcaatcagcatgccaatttccagttgttgctccacaagttgtggctgtcatt
ctagaagcttcagtgtctcaatctgctcaatgtgaaccacaatgccaacaatcatgccaa
caacaatgcattcaacaactgcaacccattcagcaatgcgcaacagcgtgcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACAATGTCTACAGCCAGCTGCTC 704 627 1126 Antisense
CAGCTGCTCCTCAGTGTCAGCAGTG 695 203 1142 Antisense
GCAGTGCCAAAATACATGCCAGCAA 21 313 1161 Antisense
GCAACAATGTGCTTCGCTATGTCAT 173 319 1203 Antisense
CTTCGCTATGTCATCAGCCATCAGC 663 217 1214 Antisense
CTCCACAATGCTATCAGCCATCAGC 32 237 1304 Antisense
CCACAAGTTGTGGCTGTCATTCTAG 447 273 1465 Antisense
GGCTGTCATTCTAGAAGCTTCAGTG 39 541 1476 Antisense
GCATTCAACAACTGCAACCCATTCA 465 307 1553 Antisense
TGCAACCCATTCAGCAATGCGCAAC 525 575 1565 Antisense
TCAGCAATGCGCAACAGCGTGCACC 658 623 1575 Antisense
Sequence Source Affymetrix Proprietary Database