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[184781_at]

Description T24E12.6 /REP_DB=WormBase Gene ID /WP=CE24012 /TR=O44878 /GB=AAB95046.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 42      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 5.7
(-3)
A 		25.7
(-0.7)
A 		7.6
(-2.8)
A 		57.2
(3)
A 		52
B 25.1
(-0.8)
A 		14
(-2)
A 		59.5
(3)
A 		4.6
(-3)
A 		55
C 35.1
(0.4)
A 		56.8
(3)
A 		16.1
(-2)
A 		7.6
(-3)
A 		49
avr 22
(-3) 		32.2
(3) 		27.7
(0.4) 		23.1
(-2.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 49.6
(3)
A 		26.3
(-0.1)
A 		17.9
(-1.2)
A 		22.3
(-0.6)
A 		4.7
(-3)
A 		29.2
(0.3)
A 		45
B 3.2
(-3)
A 		53.1
(3)
A 		35.9
(0.9)
A 		3.3
(-3)
A 		10.5
(-2.1)
A 		25.8
(-0.3)
A 		50
C 26.6
(2.7)
A 		27.6
(3)
A 		7.4
(-2.2)
A 		4.1
(-3)
A 		16
(0)
A 		24.7
(2.3)
A 		24
avr 26.5
(0.9) 		35.7
(3) 		20.4
(-0.6) 		9.9
(-3) 		10.4
(-2.9) 		26.6
(0.9) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.1
(-2.9)
A 		5.6
(0.4)
A 		2
(-3)
A 		8.4
(3)
A 		6
B 8
(0.3)
A 		3.5
(-1.8)
A 		13.8
(3)
A 		1
(-3)
A 		13
C 11.6
(1.1)
A 		16.3
(3)
A 		5.6
(-1.3)
A 		1.3
(-3)
A 		15
avr 7.2
(1.4) 		8.5
(3) 		7.1
(1.3) 		3.6
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.1
(2.8)
A 		9.3
(3)
A 		3.9
(-1.1)
A 		5.7
(0.3)
A 		1.4
(-3)
A 		7.1
(1.3)
A 		8
B 1.1
(-2.9)
A 		17.7
(3)
A 		8.7
(-0.2)
A 		0.9
(-3)
A 		4.3
(-1.8)
A 		9.6
(0.1)
A 		17
C 9.9
(3)
A 		8.4
(2)
A 		1.9
(-2.3)
A 		0.8
(-3)
A 		5.2
(-0.1)
A 		8.3
(1.9)
A 		9
avr 6.7
(-0.3) 		11.8
(3) 		4.8
(-1.5) 		2.5
(-3) 		3.6
(-2.3) 		8.3
(0.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184781_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4813
Sequence Type Exemplar sequence
Representative Public ID T24E12.6 NCBI
Target Description T24E12.6 /REP_DB=WormBase Gene ID /WP=CE24012 /TR=O44878 /GB=AAB95046.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062242(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062242 NCBI Caenorhabditis elegans T24E12.6 (T24E12.6) mRNA, complete cds. 11/11 None
SNAP00000005568 ENSEMBL cdna:SNAP chromosome:CEL140:II:3760295:3761693:-1 10/11 None
GENEFINDER00000005583 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3760295:3764580:-1 10/11 None
T24E12.6 ENSEMBL cdna:known chromosome:CEL140:II:3760294:3761692:-1 gene:T24E12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3760264-3761692(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24E12.6
Entrez Gene 188864 Entrez gene
SwissProt O44878 EMBL-EBI
WormBase CE35626 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast D88109 protein T24E12.6 [imported] - Caenorhabditis elegans 1.0E-161
blast AAB95043 Serpentine receptor, class x protein 112 [Caenorhabditis elegans] ref|NP_494644.2| Serpentine Receptor, class X family member (srx-112) [Caenorhabditis elegans] 1.0E-153
blast AAF39807 Serpentine receptor, class x protein 105 [Caenorhabditis elegans] ref|NP_494619.2| Serpentine Receptor, class X family member (srx-105) [Caenorhabditis elegans] 2.0E-67
blast AAB95046 Hypothetical protein T24E12.6 [Caenorhabditis elegans] ref|NP_494643.2| T24E12.6 [Caenorhabditis elegans] 3.0E-67
blast D88109 protein T24E12.6 [imported] - Caenorhabditis elegans 4.0E-62
blast AAB95046 Hypothetical protein T24E12.6 [Caenorhabditis elegans] ref|NP_494643.2| T24E12.6 [Caenorhabditis elegans] 1.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000005583 6 15-34,54-76,91-113,120-142,176-198,251-273
Sequence
Target Sequence 
>C. ELEGANS:184781_AT
ccccaaccgaaagcttctgactttggacaaaacaaggttcactattttaacttggagcca
tcacacgaggagtttgagcagctgaaaattgtccaaaatttcgtgttctcaggagaaggt
tttttgctcccggattgtgatccagttatgaaacggagcataatttttacgaatgctatg
aatgatcattacaaaagatctgaggatcgagtggaggcgatctataagaagttcgagcag
agagatgcaaaaatgacgtacgaccaaaacgcagtgaacatcaagaaacggatccatcgg
agacttcttgaggtaattaaatttcacgttaaaaatcagaaaaaaattcagaaagattat
ttcttcaagtatctgcaatctggacagcatatagagagaatcatgaagtgtgaggaaatc
gttgaaagctcgggagtgcctgttctgtcaaaagacgataggatgttttacgcagattat
cagaagaaaaagaatgtttttttcgctaagaaattcttacaatttcagccgaaaaagatc
tcagttgccggcaaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCAACCGAAAGCTTCTGACTTTG 6 261 400 Antisense
GGTTCACTATTTTAACTTGGAGCCA 676 505 435 Antisense
TTGGAGCCATCACACGAGGAGTTTG 634 705 451 Antisense
GGTTTTTTGCTCCCGGATTGTGATC 162 507 517 Antisense
GTACGACCAAAACGCAGTGAACATC 331 459 657 Antisense
GGATCCATCGGAGACTTCTTGAGGT 190 509 689 Antisense
TCAAGTATCTGCAATCTGGACAGCA 101 633 764 Antisense
TGAAAGCTCGGGAGTGCCTGTTCTG 389 571 822 Antisense
GAGTGCCTGTTCTGTCAAAAGACGA 353 399 833 Antisense
GACGATAGGATGTTTTACGCAGATT 665 377 853 Antisense
AAAAGATCTCAGTTGCCGGCAAATC 575 131 932 Antisense
Sequence Source Affymetrix Proprietary Database