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[184780_s_at]

Description Y102A5C.1 /REP_DB=WormBase Gene ID /WP=CE19287 /TR=Q9XTF4 /GB=CAA20972.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 36.9
(0.1)
A 		3.9
(-3)
A 		39.5
(0.4)
A 		67.2
(3)
A 		63
B 12.3
(-3)
A 		62.6
(1.7)
M 		59.2
(1.3)
A 		77
(3)
M 		65
C 41.9
(-1.8)
P 		71.1
(1.3)
A 		31.1
(-3)
A 		87.4
(3)
A 		56
avr 30.4
(-3) 		45.9
(-1) 		43.3
(-1.3) 		77.2
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 51.3
(-1.7)
A 		28.6
(-3)
A 		56.4
(-1.4)
P 		105.4
(1.4)
P 		134.5
(3)
P 		123.9
(2.4)
P 		106
B 55.8
(-2.7)
M 		53.6
(-2.8)
A 		48.7
(-3)
P 		68.2
(-2.1)
M 		154
(1.6)
P 		185
(3)
P 		136
C 4.8
(-3)
A 		50.7
(-1.5)
A 		24.1
(-2.4)
A 		91.8
(-0.2)
P 		105.9
(0.3)
P 		190.7
(3)
P 		186
avr 37.3
(-3) 		44.3
(-2.7) 		43.1
(-2.7) 		88.5
(-0.6) 		131.5
(1.4) 		166.5
(3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 13.5
(3)
A 		0.8
(-3)
A 		10.3
(1.5)
A 		9.8
(1.3)
A 		13
B 3.9
(-3)
A 		15.5
(2.6)
M 		13.7
(1.7)
A 		16.4
(3)
M 		13
C 13.9
(-1.1)
P 		20.4
(3)
A 		10.8
(-3)
A 		14.7
(-0.6)
A 		10
avr 10.4
(-3) 		12.2
(0.4) 		11.6
(-0.8) 		13.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 9.5
(-3)
A 		10.2
(-2.9)
A 		12.3
(-2.5)
P 		26.7
(0.3)
P 		40.6
(3)
P 		30.2
(1)
P 		31
B 19.4
(-2.2)
M 		17.9
(-2.4)
A 		11.8
(-3)
P 		18.1
(-2.3)
M 		62.6
(2.3)
P 		69
(3)
P 		57
C 1.8
(-3)
A 		15.5
(-1.7)
A 		6.1
(-2.6)
A 		18.5
(-1.4)
P 		34.3
(0.1)
P 		63.8
(3)
P 		62
avr 10.2
(-3) 		14.5
(-2.4) 		10.1
(-3) 		21.1
(-1.5) 		45.8
(1.8) 		54.3
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184780_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12822
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.1 NCBI
Target Description Y102A5C.1 /REP_DB=WormBase Gene ID /WP=CE19287 /TR=Q9XTF4 /GB=CAA20972.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074874(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074874 NCBI Caenorhabditis elegans Y102A5C.1 (Y102A5C.1) mRNA, complete cds. 11/11 None
Y102A5C.1 ENSEMBL cdna:known chromosome:CEL140:V:16919840:16921056:-1 gene:Y102A5C.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16919850-16921052(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y102A5C.1
Entrez Gene 180130 Entrez gene
SwissProt Q9XTF4 EMBL-EBI
WormBase CE19287 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04075 Hypothetical protein Y102A5C.1 [Caenorhabditis elegans] emb|CAA20972.1| Hypothetical protein Y102A5C.1 [Caenorhabditis elegans] ref|NP_507275.1| Y102A5C.1 [Caenorhabditis elegans] 0.0
blast CAB05695 Hypothetical protein C31C9.3 [Caenorhabditis elegans] ref|NP_496869.1| C31C9.3 [Caenorhabditis elegans] 5.0E-30
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 1.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-27
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.6E-9
Sequence
Target Sequence 
>C. ELEGANS:184780_S_AT
aaaagcttggaggccttgctgaaggcccgaaatttgccgcttccagtgaaaaatgtgaat
atagagacgaatagtgggtacgagatgaaccatgcgaagaatattattccttatctgaaa
agtggtgttctcgagaaaatcgtgacgaattgtgactcttcatcctttgaaaatatcgaa
ataatgaaggaaatcgtcgagttggatcagtggaaacaggcgaaacatctggaaattgat
agtctcgttaaaattcccattgagaattttctgcatttcgagcattttgagctgttcttc
gagcacttgtgctttcaggacgtcaaggagaggctcctagaatcctcgaacttccgccac
tgcacgctgcaagtcatgaattccttcgatcttgaagaactggcggcaaattttggaatt
cagtacatgggagatgatgaagggatacggcagacaactttctacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGCTTGGAGGCCTTGCTGAAGG 627 129 577 Antisense
CTGAAGGCCCGAAATTTGCCGCTTC 547 235 595 Antisense
GACGAATTGTGACTCTTCATCCTTT 283 379 720 Antisense
GATAGTCTCGTTAAAATTCCCATTG 453 425 814 Antisense
GAATTTTCTGCATTTCGAGCATTTT 237 325 840 Antisense
TGAGCTGTTCTTCGAGCACTTGTGC 641 569 864 Antisense
GAGCACTTGTGCTTTCAGGACGTCA 360 389 877 Antisense
GAGGCTCCTAGAATCCTCGAACTTC 699 405 906 Antisense
GCCACTGCACGCTGCAAGTCATGAA 563 279 932 Antisense
AAGTCATGAATTCCTTCGATCTTGA 189 157 947 Antisense
GGATACGGCAGACAACTTTCTACGA 680 507 1019 Antisense
Sequence Source Affymetrix Proprietary Database