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[184779_at]

Description T27A10.2 /REP_DB=WormBase Gene ID /WP=CE07552 /TR=Q22821 /GB=AAB52501.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 23      4grp_highest_8_8 > 61      4grp_high_8_8 > 18      6grp_highest_nonorm > 61      6grp_total > 03      4grp_total > 30      6grp_highest_sub > 02      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 433
1 2 3 4 range
A 582.6
(3)
P 		442.8
(0)
P 		298.3
(-3)
P 		419.8
(-0.4)
P 		284
B 535.7
(2.4)
P 		346.1
(-1.2)
P 		252.2
(-3)
P 		569.6
(3)
P 		317
C 665.2
(3)
P 		361.2
(-1.2)
P 		232.3
(-3)
P 		489.2
(0.6)
P 		433
avr 594.5
(3) 		383.4
(-0.8) 		260.9
(-3) 		492.9
(1.2) 		334

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 448
1 2 3 4 5 6 range
A 402
(1.1)
P 		495.1
(3)
P 		410.8
(1.3)
P 		406.5
(1.2)
P 		409.9
(1.3)
P 		193.7
(-3)
P 		301
B 490.7
(0.7)
P 		642
(3)
P 		344.8
(-1.6)
P 		540.6
(1.4)
P 		421.3
(-0.4)
P 		254.3
(-3)
P 		388
C 402.1
(0.7)
P 		488.1
(3)
P 		469.2
(2.5)
P 		452.6
(2)
P 		363
(-0.4)
P 		267.9
(-3)
P 		220
avr 431.6
(0.8) 		541.7
(3) 		408.3
(0.4) 		466.6
(1.5) 		398.1
(0.2) 		238.6
(-3) 		303
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 212.1
(3)
P 		96.1
(-1.6)
P 		78
(-2.3)
P 		61.4
(-3)
P 		151
B 170.8
(3)
P 		85.5
(-1.6)
P 		58.4
(-3)
P 		121.4
(0.4)
P 		112
C 220.2
(3)
P 		103.9
(-2)
P 		81
(-3)
P 		82.5
(-2.9)
P 		139
avr 201
(3) 		95.2
(-1.9) 		72.5
(-3) 		88.4
(-2.3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 74.1
(-1.7)
P 		176.1
(3)
P 		89.5
(-1)
P 		103.1
(-0.4)
P 		123.7
(0.6)
P 		47.2
(-3)
P 		129
B 170.7
(1)
P 		213.7
(3)
P 		83.7
(-3)
P 		143.2
(-0.3)
P 		171.2
(1)
P 		94.8
(-2.5)
P 		130
C 149
(3)
P 		148.9
(3)
P 		119.4
(0)
P 		91
(-2.9)
P 		117.5
(-0.2)
P 		89.7
(-3)
P 		59
avr 131.3
(0.2) 		179.6
(3) 		97.5
(-1.8) 		112.4
(-0.9) 		137.5
(0.5) 		77.2
(-3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184779_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18568
Sequence Type Exemplar sequence
Representative Public ID T27A10.2 NCBI
Target Description T27A10.2 /REP_DB=WormBase Gene ID /WP=CE07552 /TR=Q22821 /GB=AAB52501.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076215(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076215 NCBI Caenorhabditis elegans T27A10.2 (T27A10.2) mRNA, complete cds. 11/11 None
T27A10.2 ENSEMBL cdna:known chromosome:CEL140:X:3585944:3586855:1 gene:T27A10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016182 7/11 Cross Hyb Matching Probes None
GENEFINDER00000016188 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3585944-3586856(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27A10.2
Entrez Gene 180648 Entrez gene
SwissProt Q22821 EMBL-EBI
WormBase CE07552 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52501 Hypothetical protein T27A10.2 [Caenorhabditis elegans] ref|NP_508616.1| T27A10.2 [Caenorhabditis elegans] 1.0E-144
blast CAE68448 Hypothetical protein CBG14238 [Caenorhabditis briggsae] 3.0E-88
Sequence
Target Sequence 
>C. ELEGANS:184779_AT
agaactattcgaagatggcctccctcaacatgacctcggactaatgactctcggaatcct
tatctggaagcacgttatcgcaaagtccagagttctatgccttgtccgaaatatggatgg
tgacaatacccaaccactggaggctttgaaacgtgcaacctacaaattctctgtcagcca
tcacgtacagacgatggtcccgcgtcgttcttcagtatcgtccggctcttcgttcggcag
caatcactcttattactccgaaggaatgcgaatgcgaatcctgctttgccagtcaagaaa
ccaggtagataatattccagcgcaagctattcgtgaaactaaagcccttcttaatccatc
catttgtcagttgtatttctcattacgatcattcccacgttttaccggttttatgctccc
ttcttgtaaaaacttcaaattccgtgatctctgctggttttttttgtacgaaattcttcc
tatgaatctctccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACTATTCGAAGATGGCCTCCCT 623 71 249 Antisense
TGACCTCGGACTAATGACTCTCGGA 547 567 279 Antisense
AAAGTCCAGAGTTCTATGCCTTGTC 18 123 330 Antisense
GACAATACCCAACCACTGGAGGCTT 660 363 370 Antisense
GCAACCTACAAATTCTCTGTCAGCC 119 321 403 Antisense
TTCGTTCGGCAGCAATCACTCTTAT 217 695 477 Antisense
TGCGAATGCGAATCCTGCTTTGCCA 187 583 515 Antisense
TTACGATCATTCCCACGTTTTACCG 120 683 631 Antisense
TATGCTCCCTTCTTGTAAAAACTTC 163 657 660 Antisense
AATTCCGTGATCTCTGCTGGTTTTT 57 179 686 Antisense
AAATTCTTCCTATGAATCTCTCCCT 91 117 719 Antisense
Sequence Source Affymetrix Proprietary Database