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[184778_at]

Description Y9C9A.17 /REP_DB=WormBase Gene ID /WP=CE25651 /TR=Q9N2T7 /GB=AAF60940.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 36      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 29.8
(2.4)
A 		31.4
(3)
A 		16.1
(-2.8)
A 		15.6
(-3)
A 		16
B 25.8
(0.3)
A 		38.9
(3)
A 		10.8
(-2.8)
A 		9.7
(-3)
A 		29
C 22.2
(-3)
A 		46.2
(1.7)
A 		26.4
(-2.2)
A 		53.1
(3)
A 		31
avr 25.9
(-0.7) 		38.8
(3) 		17.8
(-3) 		26.1
(-0.6) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 34.6
(3)
A 		27.8
(1.6)
A 		8.2
(-2.6)
A 		6.3
(-3)
A 		7.9
(-2.7)
A 		27.7
(1.5)
A 		28
B 13
(0.1)
A 		3.7
(-3)
A 		9.4
(-1.1)
A 		5.7
(-2.3)
A 		8.5
(-1.4)
A 		21.7
(3)
A 		18
C 22.3
(0.1)
A 		4.2
(-3)
A 		39.2
(3)
A 		10.5
(-1.9)
A 		25
(0.6)
A 		7.4
(-2.5)
A 		35
avr 23.3
(3) 		11.9
(-1.3) 		18.9
(1.3) 		7.5
(-3) 		13.8
(-0.6) 		18.9
(1.3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 10.9
(3)
A 		6.8
(0.1)
A 		4.2
(-1.7)
A 		2.3
(-3)
A 		9
B 8.2
(1.9)
A 		9.6
(3)
A 		2.5
(-2.7)
A 		2.1
(-3)
A 		8
C 7.4
(-3)
A 		13.3
(3)
A 		9.2
(-1.2)
A 		9
(-1.4)
A 		6
avr 8.8
(1.8) 		9.9
(3) 		5.3
(-2.1) 		4.5
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 6.4
(0.5)
A 		9.9
(3)
A 		1.8
(-2.9)
A 		1.6
(-3)
A 		2.4
(-2.4)
A 		6.7
(0.7)
A 		8
B 4.5
(-0.1)
A 		1.2
(-3)
A 		2.3
(-2)
A 		1.5
(-2.7)
A 		3.5
(-1)
A 		8.1
(3)
A 		7
C 8.3
(1.8)
A 		1.3
(-3)
A 		10
(3)
A 		2.1
(-2.4)
A 		8.1
(1.7)
A 		2.5
(-2.2)
A 		9
avr 6.4
(3) 		4.1
(0.1) 		4.7
(0.8) 		1.7
(-3) 		4.7
(0.8) 		5.8
(2.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184778_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10783
Sequence Type Exemplar sequence
Representative Public ID Y9C9A.17 NCBI
Target Description Y9C9A.17 /REP_DB=WormBase Gene ID /WP=CE25651 /TR=Q9N2T7 /GB=AAF60940.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068271(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068271 NCBI Caenorhabditis elegans Y9C9A.17 (Y9C9A.17) mRNA, complete cds. 11/11 None
Y9C9A.17 ENSEMBL cdna:known chromosome:CEL140:IV:4911310:4912770:-1 gene:Y9C9A.17 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021388 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4911315-4912776(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y9C9A.17
Entrez Gene 189422 Entrez gene
SwissProt Q9N2T7 EMBL-EBI
WormBase CE25651 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500672 Y9C9A.17 [Caenorhabditis elegans] gb|AAF60940.1| Hypothetical protein Y9C9A.17 [Caenorhabditis elegans] 0.0
blast NP_500671 Seven TM Receptor family member (str-159) [Caenorhabditis elegans] 2.0E-67
blast NP_500675 Seven TM Receptor family member (str-158) [Caenorhabditis elegans] gb|AAF60933.2| Seven tm receptor protein 158 [Caenorhabditis elegans] 7.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.0E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500672.1 7 10-32,45-67,115-137,150-172,214-236,266-288,303-321
Y9C9A.17 7 10-32,45-67,115-137,150-172,214-236,266-288,303-321
Sequence
Target Sequence 
>C. ELEGANS:184778_AT
atcaggcttggcactacgttcagattcagagttagcaaactattggagacctattctaaa
tgattcgtttgattttaatattgataaagcatcatttatcattttctcatactggataac
tgtaaatggggcatcttctttaaacgttcgtgattttgtctgtaccttgtgtctccacgc
attcttccttttatcaataacatactgcggttccaaaacttatacaaaaatcaaggaact
tatatcacaaggagaaagtgaatattctaagaagcttcagctgcaactctacagggtatt
ggtggcccagagcattctccccatgatttttatattcattcccggaggactatttataat
atcgccctctctaagaatcaatatggaatgtttaagtcgtccgatgacaattatgacccc
catctaccttgccctggatcctattcctattctatttttagttgatgaatacagaaatgc
aatattgagtacgttaagcactgaatttatgattcataaactagcggtttcagactttct
gcggaggactttttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAGGCTTGGCACTACGTTCAGAT 664 27 513 Antisense
GGGCATCTTCTTTAAACGTTCGTGA 528 489 641 Antisense
TGATTTTGTCTGTACCTTGTGTCTC 218 565 663 Antisense
GAAGCTTCAGCTGCAACTCTACAGG 606 341 783 Antisense
GGTATTGGTGGCCCAGAGCATTCTC 441 503 807 Antisense
AGCATTCTCCCCATGATTTTTATAT 90 79 823 Antisense
AATATCGCCCTCTCTAAGAATCAAT 531 173 870 Antisense
GTCCGATGACAATTATGACCCCCAT 102 477 911 Antisense
CCCTGGATCCTATTCCTATTCTATT 178 261 944 Antisense
AAACTAGCGGTTTCAGACTTTCTGC 182 125 1030 Antisense
GACTTTCTGCGGAGGACTTTTTCGA 360 371 1045 Antisense
Sequence Source Affymetrix Proprietary Database