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[184777_s_at]

Description K06A9.1A /REP_DB=WormBase Gene ID /WP=CE19524 /TR=P91365 /GB=AAC70890.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 15      4grp_highest_8_8 > 42      4grp_high_8_8 > 41      6grp_highest_nonorm > 60      6grp_total > 15      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 461
1 2 3 4 range
A 664.4
(3)
P 		293.3
(-2.4)
P 		345.3
(-1.7)
P 		253.1
(-3)
P 		411
B 587.6
(3)
P 		345.6
(-0.8)
P 		347.5
(-0.7)
P 		203.1
(-3)
P 		385
C 514.7
(3)
P 		367.9
(-0.1)
P 		325.4
(-1)
P 		233.4
(-3)
P 		281
avr 588.9
(3) 		335.6
(-1.2) 		339.4
(-1.2) 		229.9
(-3) 		359

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 554
1 2 3 4 5 6 range
A 555.3
(3)
P 		485.3
(1.8)
P 		253.2
(-2.1)
P 		227.7
(-2.5)
P 		244.9
(-2.3)
P 		201.1
(-3)
P 		354
B 575.4
(3)
P 		545.5
(2.6)
P 		256.2
(-1.8)
P 		212.6
(-2.4)
P 		224.3
(-2.3)
P 		175.6
(-3)
P 		400
C 714.4
(3)
P 		567.4
(1.4)
P 		276.2
(-1.8)
P 		160.9
(-3)
P 		343.6
(-1)
P 		190.9
(-2.7)
P 		554
avr 615
(3) 		532.7
(1.8) 		261.9
(-2) 		200.4
(-2.8) 		270.9
(-1.8) 		189.2
(-3) 		426
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 241.9
(3)
P 		63.7
(-2.2)
P 		90.3
(-1.4)
P 		37
(-3)
P 		205
B 187.4
(3)
P 		85.4
(-1.2)
P 		80.5
(-1.5)
P 		43.3
(-3)
P 		144
C 170.4
(3)
P 		105.8
(0)
P 		113.4
(0.4)
P 		39.4
(-3)
P 		131
avr 199.9
(3) 		85
(-1.3) 		94.7
(-0.9) 		39.9
(-3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 102.4
(-0.4)
P 		172.6
(3)
P 		55.1
(-2.7)
P 		57.7
(-2.6)
P 		73.9
(-1.8)
P 		49
(-3)
P 		124
B 200.2
(3)
P 		181.6
(2.2)
P 		62.2
(-2.8)
P 		56.3
(-3)
P 		91.1
(-1.5)
P 		65.5
(-2.6)
P 		144
C 264.8
(3)
P 		173.1
(0.6)
P 		70.3
(-2)
P 		32.3
(-3)
P 		111.2
(-1)
P 		63.9
(-2.2)
P 		233
avr 189.1
(3) 		175.8
(2.4) 		62.5
(-2.4) 		48.8
(-3) 		92.1
(-1.1) 		59.5
(-2.5) 		140
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184777_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18558
Sequence Type Exemplar sequence
Representative Public ID K06A9.1A NCBI
Target Description K06A9.1A /REP_DB=WormBase Gene ID /WP=CE19524 /TR=P91365 /GB=AAC70890.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075891(11), NM_075892(11), NM_001029593(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075891 NCBI Caenorhabditis elegans K06A9.1b (K06A9.1) mRNA, complete cds. 11/11 A 
NM_075892 NCBI Caenorhabditis elegans K06A9.1a (K06A9.1) mRNA, complete cds. 11/11 A 
NM_001029593 NCBI Caenorhabditis elegans K06A9.1c (K06A9.1) mRNA, complete cds. 11/11 None
SNAP00000039855 ENSEMBL cdna:SNAP chromosome:CEL140:X:1558440:1561317:1 9/11 None
K06A9.1b ENSEMBL cdna:known chromosome:CEL140:X:1547504:1560119:1 gene:K06A9.1 11/11 A 
K06A9.1a ENSEMBL cdna:known chromosome:CEL140:X:1547504:1559723:1 gene:K06A9.1 11/11 A 
K06A9.1c ENSEMBL cdna:known chromosome:CEL140:X:1549442:1559723:1 gene:K06A9.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000039861 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1547503-1559723(+) 100.0 100.0
Public Domain and Genome References
Ensembl K06A9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC70890 Hypothetical protein K06A9.1b [Caenorhabditis elegans] ref|NP_508292.1| K06A9.1b [Caenorhabditis elegans] 1.0E-106
blast AAP82647 Hypothetical protein K06A9.1c [Caenorhabditis elegans] ref|NP_001024764.1| K06A9.1c [Caenorhabditis elegans] 1.0E-101
blast AAC70889 Hypothetical protein K06A9.1a [Caenorhabditis elegans] ref|NP_508293.1| K06A9.1a [Caenorhabditis elegans] 1.0E-101
blast AAP82647 Hypothetical protein K06A9.1c [Caenorhabditis elegans] ref|NP_001024764.1| K06A9.1c [Caenorhabditis elegans] 1.0E-100
blast AAC70889 Hypothetical protein K06A9.1a [Caenorhabditis elegans] ref|NP_508293.1| K06A9.1a [Caenorhabditis elegans] 1.0E-100
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508292.1 1 7-29
NP_508293.1 1 7-29
K06A9.1b 1 7-29
K06A9.1a 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:184777_S_AT
gaagcacagttaccgtaggatccacggaagcgagtacatcaggttcatcactcgccacaa
cttccgcgccaaaacccagtgtgacttgtctgttcatgtacgatacacaatccaaagaaa
tagatcaaacagctataaacacgtataaaacttatttcaatttcgctctactggttgctt
ccaaattgaacaatgaatcaattttgactggatacatcgataacttcggatacagtgctg
ggttgaatgatcatcaatattaccctactgacgactacaatggtattaagtctgtacctt
tcccaattgatggcactgatgacgacattgatcttgatttgaaagatgtcgacaaaagtt
tggcaacagcagattggacaccaccagtggctgaccaaacctgcatgattttcatttctg
ctgcaccagaagatgagtatgggggcactactataaaatcgacttatacttacttcgaga
cagtcgttggagttcttgttggaggagctaaaagtataccgggactttcaattgacaaaa
atatagttatcacgaacaatacaatgaacgaccgtgacgctagtgcagttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCACAGTTACCGTAGGATCCAC 657 339 2486 Antisense
GGATCCACGGAAGCGAGTACATCAG 692 511 2503 Antisense
GTGTGACTTGTCTGTTCATGTACGA 171 487 2564 Antisense
TTCAATTTCGCTCTACTGGTTGCTT 432 685 2641 Antisense
AATATTACCCTACTGACGACTACAA 630 163 2741 Antisense
GTCTGTACCTTTCCCAATTGATGGC 322 471 2775 Antisense
AGCAGATTGGACACCACCAGTGGCT 61 79 2853 Antisense
CCAGTGGCTGACCAAACCTGCATGA 13 271 2869 Antisense
CCTGCATGATTTTCATTTCTGCTGC 139 267 2885 Antisense
GTATACCGGGACTTTCAATTGACAA 565 453 2999 Antisense
ACGACCGTGACGCTAGTGCAGTTGT 215 91 3053 Antisense
Sequence Source Affymetrix Proprietary Database