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[184776_at]

Description Y113G7B.5 /REP_DB=WormBase Gene ID /WP=CE23287 /TR=Q9U2X8 /GB=CAB54327.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 16      6grp_cgc > 78      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 266
1 2 3 4 range
A 13.5
(-3)
A 		111
(0.6)
A 		98.8
(0.2)
A 		175.9
(3)
P 		162
B 72.4
(-3)
A 		80.8
(-2.8)
A 		93.3
(-2.4)
M 		279
(3)
P 		207
C 58.1
(-3)
A 		86.9
(0.3)
A 		102.9
(2.1)
P 		111.2
(3)
P 		53
avr 48
(-3) 		92.9
(-1.1) 		98.3
(-0.9) 		188.7
(3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 480
1 2 3 4 5 6 range
A 77
(-3)
A 		94.2
(-2.8)
P 		90.7
(-2.8)
P 		224.2
(-1)
P 		400.8
(1.4)
P 		514.7
(3)
P 		438
B 35.1
(-3)
A 		34.7
(-3)
A 		164.8
(-1.3)
P 		122.3
(-1.9)
P 		429.5
(2.1)
P 		496.8
(3)
P 		462
C 48.5
(-3)
A 		117.7
(-2.1)
A 		68
(-2.7)
A 		195.2
(-1.1)
P 		444.4
(2.3)
P 		500.9
(3)
P 		452
avr 53.5
(-3) 		82.2
(-2.6) 		107.8
(-2.3) 		180.6
(-1.3) 		424.9
(1.9) 		504.1
(3) 		451
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 4.9
(-3)
A 		24.1
(2.5)
A 		25.8
(3)
A 		25.7
(3)
P 		21
B 23.1
(-2.5)
A 		19.9
(-3)
A 		21.6
(-2.7)
M 		59.4
(3)
P 		40
C 19.2
(-2.9)
A 		25
(-0.8)
A 		35.9
(3)
P 		18.8
(-3)
P 		17
avr 15.7
(-3) 		23
(-0.7) 		27.8
(0.8) 		34.6
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 14.2
(-3)
A 		33.5
(-2)
P 		19.8
(-2.7)
P 		56.9
(-0.7)
P 		120.9
(2.8)
P 		125.3
(3)
P 		111
B 12.2
(-3)
A 		11.6
(-3)
A 		40
(-2)
P 		32.4
(-2.3)
P 		174.5
(2.6)
P 		185.3
(3)
P 		174
C 18
(-3)
A 		35.9
(-2.3)
A 		17.3
(-3)
A 		39.3
(-2.1)
P 		143.8
(2)
P 		167.7
(3)
P 		150
avr 14.8
(-3) 		27
(-2.5) 		25.7
(-2.5) 		42.9
(-1.8) 		146.4
(2.5) 		159.4
(3) 		145
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184776_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13672
Sequence Type Exemplar sequence
Representative Public ID Y113G7B.5 NCBI
Target Description Y113G7B.5 /REP_DB=WormBase Gene ID /WP=CE23287 /TR=Q9U2X8 /GB=CAB54327.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075495(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075495 NCBI Caenorhabditis elegans Feminization Of Germline family member (fog-2) (fog-2) mRNA, complete cds. 11/11 None
SNAP00000024709 ENSEMBL cdna:SNAP chromosome:CEL140:V:20195001:20200756:1 11/11 None
GENEFINDER00000024728 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20195001:20198502:1 11/11 None
Y113G7B.5 ENSEMBL cdna:known chromosome:CEL140:V:20197259:20198572:1 gene:Y113G7B.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20197290-20198502(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol fog-2
Ensembl Y113G7B.5
Entrez Gene 180321 Entrez gene
SwissProt Q9U2X8 EMBL-EBI
WormBase CE23287 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from physical interaction QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54327 Hypothetical protein Y113G7B.5 [Caenorhabditis elegans] ref|NP_507896.1| Feminization Of Germline family member (fog-2) [Caenorhabditis elegans] 1.0E-180
blast CAB54329 Hypothetical protein Y113G7B.7 [Caenorhabditis elegans] ref|NP_507897.1| Y113G7B.7 [Caenorhabditis elegans] 1.0E-179
blast CAB54327 Hypothetical protein Y113G7B.5 [Caenorhabditis elegans] ref|NP_507896.1| Feminization Of Germline family member (fog-2) [Caenorhabditis elegans] 1.0E-176
blast CAB54327 Hypothetical protein Y113G7B.5 [Caenorhabditis elegans] ref|NP_507896.1| Feminization Of Germline family member (fog-2) [Caenorhabditis elegans] 1.0E-168
blast CAB54326 Hypothetical protein Y113G7B.4 [Caenorhabditis elegans] ref|NP_507895.1| Y113G7B.4 [Caenorhabditis elegans] 1.0E-165
blast CAB54326 Hypothetical protein Y113G7B.4 [Caenorhabditis elegans] ref|NP_507895.1| Y113G7B.4 [Caenorhabditis elegans] 1.0E-159
blast CAB54326 Hypothetical protein Y113G7B.4 [Caenorhabditis elegans] ref|NP_507895.1| Y113G7B.4 [Caenorhabditis elegans] 1.0E-109
blast CAB54329 Hypothetical protein Y113G7B.7 [Caenorhabditis elegans] ref|NP_507897.1| Y113G7B.7 [Caenorhabditis elegans] 4.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.3E-58
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.7E-11
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.9E-56
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.3E-58
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.5E-54
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.3E-10
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.7E-11
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.3E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.3E-58
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.7E-11
Sequence
Target Sequence 
>C. ELEGANS:184776_AT
gttatcgtctcttcacatgaagcttcaaagcaatttgtggaatggattagagatattgct
caatcaggaattctgctgcacacaaaaaaaataaaattggacatttttcccctcaaagat
gtgttcggtgtcctttctcactgcaagcctggatttcttgaagacatcgaattttactgt
tatgactccgctggaaaaatggatgaaattatcaatttggaacaatggaaacgcgctaaa
tcgattaatattgagggacgtgtatgcgaagatattcccattgagcacttcttccatttt
tctcgtatcaccatcaaattgagaaaactatcagtttctgatgcaattaaaataagagat
gacctaatgaagtcagctcattttgaatatgcatacatcaagattatagaaggagtcgac
ccagacgttttgagagctatcaatccaaattaccatccatatgatgctctcgatcctttt
gaacacgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATCGTCTCTTCACATGAAGCTT 545 447 412 Antisense
GCTCAATCAGGAATTCTGCTGCACA 126 303 469 Antisense
ATTGGACATTTTTCCCCTCAAAGAT 393 3 507 Antisense
AAAGATGTGTTCGGTGTCCTTTCTC 567 121 526 Antisense
ATTTTACTGTTATGACTCCGCTGGA 81 15 582 Antisense
GACGTGTATGCGAAGATATTCCCAT 592 377 668 Antisense
CATTTTTCTCGTATCACCATCAAAT 392 215 706 Antisense
GTCGACCCAGACGTTTTGAGAGCTA 608 471 826 Antisense
GAGCTATCAATCCAAATTACCATCC 448 387 845 Antisense
CATCCATATGATGCTCTCGATCCTT 355 211 865 Antisense
TGCTCTCGATCCTTTTGAACACGGA 157 579 876 Antisense
Sequence Source Affymetrix Proprietary Database