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[184775_at]

Description C14A11.4 /REP_DB=WormBase Gene ID /WP=CE28431 /TR=O02133 /GB=AAB52871.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 12      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 5.2
(-1.3)
A 		10.1
(1.8)
A 		2.6
(-3)
A 		11.9
(3)
A 		9
B 2.2
(-2.6)
A 		7.8
(3)
A 		1.8
(-3)
A 		4.1
(-0.7)
A 		6
C 24.6
(0.4)
A 		7.1
(-3)
A 		14
(-1.6)
A 		37.7
(3)
A 		31
avr 10.7
(-0.7) 		8.3
(-1.9) 		6.1
(-3) 		17.9
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 11.7
(3)
A 		2.7
(-2.2)
A 		3.8
(-1.6)
A 		5.1
(-0.8)
A 		7.8
(0.7)
A 		1.4
(-3)
A 		10
B 5.9
(1.6)
A 		3.3
(-0.9)
A 		1.2
(-3)
A 		6.3
(2)
A 		7.3
(3)
A 		7.1
(2.8)
A 		6
C 2.4
(-2.2)
A 		2.1
(-2.3)
A 		12.5
(3)
A 		2.5
(-2.1)
A 		2.1
(-2.3)
A 		0.8
(-3)
A 		12
avr 6.7
(3) 		2.7
(-3) 		5.8
(1.7) 		4.6
(-0.2) 		5.7
(1.5) 		3.1
(-2.4) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.9
(1.8)
A 		2.2
(3)
A 		0.7
(-3)
A 		1.7
(1)
A 		2
B 0.7
(-1.8)
A 		1.9
(3)
A 		0.4
(-3)
A 		0.9
(-1)
A 		2
C 8.1
(3)
A 		2.1
(-3)
A 		4.9
(-0.2)
A 		6.4
(1.3)
A 		6
avr 3.6
(3) 		2.1
(-2.6) 		2
(-3) 		3
(0.8) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 2.2
(2.4)
A 		1
(-1)
A 		0.8
(-1.6)
A 		1.3
(-0.1)
A 		2.4
(3)
A 		0.3
(-3)
A 		2
B 2.1
(1)
A 		1.1
(-1.2)
A 		0.3
(-3)
A 		1.7
(0.1)
A 		3
(3)
A 		2.6
(2.1)
A 		3
C 0.9
(-1.8)
A 		0.6
(-2.4)
A 		3.2
(3)
A 		0.5
(-2.6)
A 		0.7
(-2.2)
A 		0.3
(-3)
A 		3
avr 1.7
(1.4) 		0.9
(-3) 		1.4
(-0.3) 		1.2
(-1.4) 		2
(3) 		1.1
(-1.9) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184775_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18172
Sequence Type Exemplar sequence
Representative Public ID C14A11.4 NCBI
Target Description C14A11.4 /REP_DB=WormBase Gene ID /WP=CE28431 /TR=O02133 /GB=AAB52871.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171641
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171641 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-150) (tag-150) mRNA, complete cds. A 
GENEFINDER00000039992 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2785594:2791590:1 None
C14A11.3b ENSEMBL cdna:known chromosome:CEL140:X:2785594:2799224:1 gene:C14A11.3 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039979 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2785939-2790261(+) 100.0 100.0
Public Domain and Genome References
Ensembl C14A11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52871 Temporarily assigned gene name protein 150, isoform b [Caenorhabditis elegans] ref|NP_741736.1| Temporarily Assigned Gene name family member (tag-150) [Caenorhabditis elegans] 0.0
blast AAB52870 Temporarily assigned gene name protein 150, isoform a [Caenorhabditis elegans] ref|NP_741737.1| Temporarily Assigned Gene name family member (tag-150) [Caenorhabditis elegans] 0.0
blast CAE58834 Hypothetical protein CBG02046 [Caenorhabditis briggsae] 0.0
blast AAB52871 Temporarily assigned gene name protein 150, isoform b [Caenorhabditis elegans] ref|NP_741736.1| Temporarily Assigned Gene name family member (tag-150) [Caenorhabditis elegans] 1.0E-100
blast CAE58835 Hypothetical protein CBG02047 [Caenorhabditis briggsae] 2.0E-75
blast EAA03972 ENSANGP00000009256 [Anopheles gambiae str. PEST] ref|XP_308154.2| ENSANGP00000009256 [Anopheles gambiae str. PEST] 6.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR001849 EMBL-EBI Pleckstrin-like 5.1E-8
Pfam IPR000219 EMBL-EBI DH domain 1.6E-15
Sequence
Target Sequence 
>C. ELEGANS:184775_AT
ggatactacttccccaatgaatcagttacttctactgacaacaatcgaaacttcaactct
tcttaacctgattcattactctttgtactttaccgccttaggccctggaaaaagaattat
tcagtgttgtgtgtgtatagagcttgagtcagtcactagtcataaaccattttggcgtca
gtttgagaaaactagaaatgagatgacatgccgacaaaacacactgtcaaatgcggttat
gctaattcaatcaagcaatacttcgaagcaaaacaaaaacgcgatggaatcagtttccaa
gacaatatcacaaatcgaagaacgcattggagacattcgaagaatgtcccttgccaaacg
tgaccagctcaccaaactgcacctccaaaagcctccaccagtacaagtcgtcactccgga
aaaaaagagcaaaaagaatagtagcaaaaacgaggtaggaattcatcatcatacaagggg
cgcccgtatgccgtcaaatagacacaaccagaaggacctttcttatgattcattagcgac
ggtgccaggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATACTACTTCCCCAATGAATCAG 462 507 363 Antisense
TCAACTCTTCTTAACCTGATTCATT 126 631 415 Antisense
TCATTACTCTTTGTACTTTACCGCC 356 615 435 Antisense
AGAGCTTGAGTCAGTCACTAGTCAT 461 69 501 Antisense
GATGACATGCCGACAAAACACACTG 41 413 564 Antisense
ACACACTGTCAAATGCGGTTATGCT 340 111 581 Antisense
AGAATGTCCCTTGCCAAACGTGACC 519 75 703 Antisense
CAGTACAAGTCGTCACTCCGGAAAA 522 205 761 Antisense
ATCATACAAGGGGCGCCCGTATGCC 521 27 830 Antisense
GAAGGACCTTTCTTATGATTCATTA 656 333 873 Antisense
GATTCATTAGCGACGGTGCCAGGCT 152 429 889 Antisense
Sequence Source Affymetrix Proprietary Database