[Home] | [Total List]

[184774_at]

Description Y9C9A.13 /REP_DB=WormBase Gene ID /WP=CE25647 /TR=Q9N2S4 /GB=AAF60936.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 11.3
(3)
A 		5.5
(-1.3)
A 		8
(0.6)
A 		3.2
(-3)
A 		8
B 24.9
(3)
A 		6.7
(-3)
A 		15.6
(-0.1)
A 		19.2
(1.1)
A 		18
C 5.2
(-2.7)
A 		1.4
(-3)
A 		4.8
(-2.7)
A 		67.5
(3)
P 		66
avr 13.8
(-0.8) 		4.5
(-3) 		9.5
(-1.8) 		30
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 6.8
(-1.5)
A 		6.6
(-1.6)
A 		8.9
(-0.8)
A 		8.7
(-0.9)
A 		20.8
(3)
A 		2.2
(-3)
A 		19
B 2.3
(-2.9)
A 		2
(-3)
A 		3.6
(-2.5)
A 		2.5
(-2.8)
A 		18.3
(2.5)
A 		19.7
(3)
A 		18
C 2.3
(-2.6)
A 		5.1
(1.4)
A 		3.9
(-0.3)
A 		4.6
(0.7)
A 		2
(-3)
A 		6.2
(3)
A 		4
avr 3.8
(-3) 		4.6
(-2.5) 		5.5
(-2) 		5.3
(-2.1) 		13.7
(3) 		9.4
(0.4) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.1
(3)
A 		1.2
(-1.8)
A 		2.1
(-0.3)
A 		0.5
(-3)
A 		4
B 7.9
(3)
A 		1.6
(-3)
A 		3.6
(-1.1)
A 		4.1
(-0.6)
A 		6
C 1.7
(-2.3)
A 		0.4
(-3)
A 		1.7
(-2.3)
A 		11.4
(3)
P 		11
avr 4.6
(2) 		1.1
(-3) 		2.5
(-1) 		5.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.3
(-2.2)
A 		2.3
(-1.1)
A 		1.9
(-1.6)
A 		2.2
(-1.2)
A 		6.3
(3)
A 		0.5
(-3)
A 		6
B 0.8
(-2.9)
A 		0.7
(-3)
A 		0.9
(-2.8)
A 		0.7
(-3)
A 		7.4
(3)
A 		7.3
(2.9)
A 		7
C 0.8
(-2.6)
A 		1.6
(0.9)
A 		1
(-1.7)
A 		0.9
(-2.1)
A 		0.7
(-3)
A 		2.1
(3)
A 		1
avr 1
(-3) 		1.5
(-2.2) 		1.3
(-2.5) 		1.3
(-2.5) 		4.8
(3) 		3.3
(0.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184774_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10684
Sequence Type Exemplar sequence
Representative Public ID Y9C9A.13 NCBI
Target Description Y9C9A.13 /REP_DB=WormBase Gene ID /WP=CE25647 /TR=Q9N2S4 /GB=AAF60936.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068284(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068284 NCBI Caenorhabditis elegans Y9C9A.13 (Y9C9A.13) mRNA, complete cds. 11/11 None
GENEFINDER00000021416 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4966087:4969509:-1 11/11 None
Y9C9A.13 ENSEMBL cdna:known chromosome:CEL140:IV:4966087:4969509:-1 gene:Y9C9A.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4966092-4969515(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y9C9A.13
Entrez Gene 189418 Entrez gene
SwissProt Q9N2S4 EMBL-EBI
WormBase CE25647 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500685 Y9C9A.13 [Caenorhabditis elegans] gb|AAF60936.1| Hypothetical protein Y9C9A.13 [Caenorhabditis elegans] 0.0
blast CAA92801 Hypothetical protein C33A12.12 [Caenorhabditis elegans] emb|CAA22147.1| Hypothetical protein C33A12.12 [Caenorhabditis elegans] ref|NP_501674.1| C33A12.12 [Caenorhabditis elegans] emb|CAB16465.1| C33A12.12 [Caenorhabditis elegans] 1.0E-46
blast CAB05510 Hypothetical protein F44E5.2 [Caenorhabditis elegans] ref|NP_496512.1| F44E5.2 [Caenorhabditis elegans] 3.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.074
Sequence
Target Sequence 
>C. ELEGANS:184774_AT
ttcgaatctcgaagtttctgtcagagaccacgagctctcacgaaaaatattgcacgtgtt
tattgaaatgtaatggtgcagaaatgttattcgaacatttgaaaacaacaggagcagcag
ttcaaatgcatattacagatattttaagaaatttggcaacaatcaaaagtgtcgcaaata
ttgaagtttttcacgagaaagagaatattgattttttgaggaagcttctaattggtaaca
tcaacttcagagtgagaaatgggaagtatatatttgctgaattagcgtacaacgcatcaa
ccatcctattctcgatcacatccaattgcagtccccattcatacgctcatgtggaaagtg
aaaaaatcaggtcagaattgagtgaaattatttctataattggtattcaccaaataactg
ccaatgtggatgccgttttatcaaacaattttctcgaaaagttaattatacttacaaaat
ccgacgaatcgattctgttcgcattgttaacacttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGAATCTCGAAGTTTCTGTCAGA 351 697 1469 Antisense
CTGTCAGAGACCACGAGCTCTCACG 385 239 1486 Antisense
CGAGCTCTCACGAAAAATATTGCAC 156 251 1499 Antisense
AGGAAGCTTCTAATTGGTAACATCA 632 53 1687 Antisense
TAGCGTACAACGCATCAACCATCCT 562 649 1751 Antisense
TCTCGATCACATCCAATTGCAGTCC 363 609 1778 Antisense
TCCCCATTCATACGCTCATGTGGAA 435 597 1800 Antisense
GGTATTCACCAAATAACTGCCAATG 71 505 1870 Antisense
CTGCCAATGTGGATGCCGTTTTATC 691 235 1886 Antisense
ATCCGACGAATCGATTCTGTTCGCA 645 37 1947 Antisense
TCTGTTCGCATTGTTAACACTTCAA 114 609 1962 Antisense
Sequence Source Affymetrix Proprietary Database