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[184772_at]

Description C01G10.14 /REP_DB=WormBase Gene ID /WP=CE07823 /TR=Q93173 /GB=CAB02715.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 5.5
(-3)
A 		12.4
(-2.5)
A 		16.6
(-2.3)
A 		96.6
(3)
M 		91
B 40.1
(-0.6)
M 		45.2
(3)
A 		36.7
(-3)
A 		44.2
(2.3)
A 		9
C 14.2
(-2.3)
A 		41.3
(1.3)
P 		8.7
(-3)
A 		54.7
(3)
A 		46
avr 19.9
(-3) 		33
(-1.3) 		20.7
(-2.9) 		65.2
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 37.2
(3)
A 		2.9
(-3)
A 		32.5
(2.2)
P 		9.9
(-1.8)
A 		34.5
(2.5)
A 		5.2
(-2.6)
A 		34
B 30.8
(-0.4)
P 		56.1
(3)
P 		47.9
(1.9)
P 		11.4
(-3)
A 		37.1
(0.4)
A 		23.3
(-1.4)
A 		45
C 21.3
(-1)
P 		53.1
(3)
P 		5
(-3)
A 		32.9
(0.5)
M 		17
(-1.5)
A 		25.9
(-0.4)
A 		48
avr 29.8
(0.6) 		37.4
(3) 		28.5
(0.2) 		18.1
(-3) 		29.5
(0.5) 		18.1
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2
(-3)
A 		2.7
(-2.7)
A 		4.3
(-1.9)
A 		14.1
(3)
M 		12
B 12.8
(3)
M 		11.2
(0.8)
A 		8.5
(-3)
A 		9.4
(-1.7)
A 		4
C 4.7
(-1.9)
A 		11.9
(3)
P 		3
(-3)
A 		9.2
(1.2)
A 		9
avr 6.5
(-1.7) 		8.6
(0.5) 		5.3
(-3) 		10.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6.9
(0.8)
A 		1
(-3)
A 		7.1
(0.9)
P 		2.5
(-2)
A 		10.4
(3)
A 		1.3
(-2.8)
A 		9
B 10.7
(-0.1)
P 		18.7
(3)
P 		11.6
(0.3)
P 		3
(-3)
A 		15.1
(1.6)
A 		8.7
(-0.8)
A 		16
C 7.9
(-0.3)
P 		16.2
(3)
P 		1.3
(-3)
A 		6.6
(-0.9)
M 		5.5
(-1.3)
A 		8.7
(-0)
A 		15
avr 8.5
(0.4) 		12
(3) 		6.7
(-1) 		4
(-3) 		10.3
(1.7) 		6.2
(-1.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184772_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14004
Sequence Type Exemplar sequence
Representative Public ID C01G10.14 NCBI
Target Description C01G10.14 /REP_DB=WormBase Gene ID /WP=CE07823 /TR=Q93173 /GB=CAB02715.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074322(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074322 NCBI Caenorhabditis elegans C01G10.14 (C01G10.14) mRNA, complete cds. 11/11 A 
C01G10.14 ENSEMBL cdna:known chromosome:CEL140:V:15107310:15108492:-1 gene:C01G10.14 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15107309-15108492(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01G10.14
Entrez Gene 180020 Entrez gene
SwissProt Q93173 EMBL-EBI
WormBase CE07823 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02715 Hypothetical protein C01G10.14 [Caenorhabditis elegans] ref|NP_506723.1| C01G10.14 [Caenorhabditis elegans] 1.0E-155
blast CAB02771 Hypothetical protein C25D7.1 [Caenorhabditis elegans] ref|NP_506701.1| C25D7.1 [Caenorhabditis elegans] 4.0E-68
blast CAE71521 Hypothetical protein CBG18456 [Caenorhabditis briggsae] 1.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 2.9E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506723.1 2 167-189,216-238
C01G10.14 2 167-189,216-238
Sequence
Target Sequence 
>C. ELEGANS:184772_AT
ggtgcaaacaatttccaactcgactgacttgttcattcgttggaacaatgtcttctccac
agtaaacatggcattttgtgtctcatttcaatactgtatcatgactttctgcagctacca
attgtatcacgatatggaagagaaactaagcctcttatcgggagaagttcgaaaattgca
tctccaaatattcaaaactcttatgcctactggaatatttttgggtatattcgcgcttta
tccagcattagacgcatgtattctgatgtacgtcatcacagactacagaagagccttaaa
aggtatactagaactgaaaatcttgttaaatgtttttttttcagatgttctgaagttttt
caatccgataaacaggacagctgctgacaacgtctctgtagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCAAACAATTTCCAACTCGACT 136 501 450 Antisense
AACTCGACTGACTTGTTCATTCGTT 521 141 466 Antisense
GGAACAATGTCTTCTCCACAGTAAA 367 527 491 Antisense
AACATGGCATTTTGTGTCTCATTTC 629 137 514 Antisense
GTGTCTCATTTCAATACTGTATCAT 317 487 527 Antisense
GTATCATGACTTTCTGCAGCTACCA 70 453 545 Antisense
CTGCAGCTACCAATTGTATCACGAT 636 237 558 Antisense
GAGAAACTAAGCCTCTTATCGGGAG 251 391 589 Antisense
ATTCAAAACTCTTATGCCTACTGGA 703 11 639 Antisense
GTATATTCGCGCTTTATCCAGCATT 87 453 674 Antisense
AGCTGCTGACAACGTCTCTGTAGCT 213 81 828 Antisense
Sequence Source Affymetrix Proprietary Database