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[184771_at]

Description H02F09.2 /REP_DB=WormBase Gene ID /WP=CE19478 /TR=O76603 /GB=AAC64623.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 37      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 8.9
(-3)
A 		45.6
(0.5)
A 		10.1
(-2.9)
A 		72.5
(3)
A 		64
B 83.6
(3)
A 		41.2
(-0.2)
A 		6.2
(-2.8)
A 		3.2
(-3)
A 		80
C 71.5
(3)
A 		14.6
(-2.1)
A 		4.1
(-3)
A 		20.4
(-1.5)
A 		67
avr 54.7
(3) 		33.8
(0.4) 		6.8
(-3) 		32
(0.2) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 25.2
(0.8)
A 		39.1
(3)
A 		11.6
(-1.4)
A 		4.6
(-2.6)
A 		4.4
(-2.6)
A 		2
(-3)
A 		37
B 44.4
(3)
A 		32.9
(1.4)
A 		6.1
(-2.4)
A 		1.5
(-3)
A 		4.1
(-2.6)
A 		2.5
(-2.9)
A 		43
C 8.9
(-1.9)
A 		41
(3)
A 		34.7
(2)
A 		3.2
(-2.7)
A 		1.5
(-3)
A 		3.2
(-2.7)
A 		40
avr 26.2
(1) 		37.7
(3) 		17.5
(-0.5) 		3.1
(-2.9) 		3.3
(-2.9) 		2.6
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 3.2
(-2.6)
A 		9.9
(2.5)
A 		2.6
(-3)
A 		10.6
(3)
A 		8
B 26.7
(3)
A 		10.2
(-0.8)
A 		1.4
(-2.8)
A 		0.7
(-3)
A 		26
C 23.7
(3)
A 		4.2
(-2.2)
A 		1.4
(-3)
A 		3.4
(-2.5)
A 		22
avr 17.9
(3) 		8.1
(-0.7) 		1.8
(-3) 		4.9
(-1.8) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 4.7
(-1.1)
A 		13.9
(3)
A 		2.5
(-2.1)
A 		1.2
(-2.7)
A 		1.3
(-2.6)
A 		0.5
(-3)
A 		13
B 15.4
(3)
A 		11
(1.2)
A 		1.5
(-2.6)
A 		0.4
(-3)
A 		1.7
(-2.5)
A 		0.9
(-2.8)
A 		15
C 3.3
(-1.6)
A 		12.5
(3)
A 		8.8
(1.2)
A 		0.6
(-3)
A 		0.5
(-3)
A 		1.1
(-2.7)
A 		12
avr 7.8
(0.6) 		12.5
(3) 		4.3
(-1.2) 		0.7
(-3) 		1.2
(-2.7) 		0.8
(-2.9) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184771_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18545
Sequence Type Exemplar sequence
Representative Public ID H02F09.2 NCBI
Target Description H02F09.2 /REP_DB=WormBase Gene ID /WP=CE19478 /TR=O76603 /GB=AAC64623.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075895(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075895 NCBI Caenorhabditis elegans H02F09.2 (H02F09.2) mRNA, complete cds. 10/11 None
H02F09.2 ENSEMBL cdna:known chromosome:CEL140:X:1573215:1574005:1 gene:H02F09.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039859 8/11 Cross Hyb Matching Probes None
GENEFINDER00000039866 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1573214-1574005(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H02F09.2
Entrez Gene 186666 Entrez gene
SwissProt O76603 EMBL-EBI
WormBase CE35730 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC64623 Hypothetical protein H02F09.2 [Caenorhabditis elegans] ref|NP_508296.2| H02F09.2 [Caenorhabditis elegans] 3.0E-84
blast AAU05552 Hypothetical protein Y54G2A.37 [Caenorhabditis elegans] ref|NP_001023502.1| Y54G2A.37 [Caenorhabditis elegans] 3.0E-46
blast AAK68533 Hypothetical protein Y54G2A.9 [Caenorhabditis elegans] ref|NP_500257.1| Y54G2A.9 [Caenorhabditis elegans] 6.0E-44
Sequence
Target Sequence 
>C. ELEGANS:184771_AT
gtatgacacacaatcttctgatatcagtcaagaagctctcactacatatcaaacgtacta
caattttgtcagactgatttcgtccaaattaaatgaccgatcaattttgagcggaaattt
tgatcattttggatacggtcccggaggcgaagatcatgaaacttatcaaattgatgacta
tgcaaatatgaacagcataccatttccgttacatgcatctgacactgacattgatcttga
tttgaaagatgtggatgggagcatggctagtgcaggatggtcatcaactgtcaatgaacg
tcctttttgtaaatttagttcaaagaaattgacaggaactgcctacgatggtactacaat
taagccaacatataataatttcaaaacagtgataggcgtattagttggaggagccacaag
cattccaggactgactacaggtacaaatgtggtcacagcagattcactgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGACACACAATCTTCTGATATC 354 455 15 Antisense
GAAGCTCTCACTACATATCAAACGT 359 343 46 Antisense
GATCATTTTGGATACGGTCCCGGAG 100 407 136 Antisense
ACGGTCCCGGAGGCGAAGATCATGA 460 95 149 Antisense
GAACAGCATACCATTTCCGTTACAT 189 351 204 Antisense
TCCGTTACATGCATCTGACACTGAC 287 595 219 Antisense
GGAGCATGGCTAGTGCAGGATGGTC 47 519 272 Antisense
AACTGTCAATGAACGTCCTTTTTGT 480 143 300 Antisense
GGAACTGCCTACGATGGTACTACAA 302 529 349 Antisense
AGCCACAAGCATTCCAGGACTGACT 19 85 426 Antisense
ATGTGGTCACAGCAGATTCACTGAA 357 49 461 Antisense
Sequence Source Affymetrix Proprietary Database