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[184770_at] 7TM chemoreceptor, sre family

Description C50E10.8 /REP_DB=WormBase Gene ID /WP=CE19762 /TR=Q9TZJ6 /GB=AAC67439.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 18      6grp_cgc > 91      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 3.7
(-3)
A 		6.7
(-2)
A 		13.6
(0.2)
A 		22
(3)
A 		18
B 8.3
(-2.4)
A 		54.2
(3)
A 		3.2
(-3)
A 		49.5
(2.4)
A 		51
C 3.4
(-3)
A 		9.2
(-2.6)
A 		3.9
(-3)
A 		80.8
(3)
P 		77
avr 5.1
(-3) 		23.4
(-0.6) 		6.9
(-2.8) 		50.8
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 16.7
(-0.3)
A 		3.9
(-3)
A 		28.2
(2.2)
A 		6.4
(-2.5)
A 		9
(-1.9)
A 		32.1
(3)
A 		28
B 7.3
(-2.7)
A 		10.8
(-2.4)
A 		68.5
(3)
A 		17.2
(-1.8)
A 		5.1
(-2.9)
A 		3.9
(-3)
A 		65
C 3.5
(-3)
A 		7.4
(-1.8)
A 		15.2
(0.5)
A 		10.3
(-0.9)
A 		7
(-1.9)
A 		23.3
(3)
A 		20
avr 9.2
(-2.6) 		7.4
(-2.9) 		37.3
(3) 		11.3
(-2.1) 		7
(-3) 		19.8
(-0.5) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.4
(-3)
A 		1.4
(-3)
A 		3.6
(3)
A 		3.2
(1.9)
A 		2
B 2.7
(-2.1)
A 		13.4
(3)
A 		0.7
(-3)
A 		10.5
(1.6)
A 		13
C 1.1
(-3)
A 		2.6
(-2.3)
A 		1.4
(-2.9)
A 		13.6
(3)
P 		13
avr 1.7
(-3) 		5.8
(0.3) 		1.9
(-2.8) 		9.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.1
(-1.4)
A 		1.4
(-3)
A 		6.1
(1.4)
A 		1.6
(-2.8)
A 		2.7
(-1.8)
A 		7.8
(3)
A 		6
B 2.5
(-2.6)
A 		3.6
(-2.1)
A 		16.6
(3)
A 		4.6
(-1.7)
A 		2.1
(-2.7)
A 		1.4
(-3)
A 		15
C 1.3
(-3)
A 		2.3
(-2.1)
A 		3.9
(-0.6)
A 		2.1
(-2.3)
A 		2.3
(-2.1)
A 		7.8
(3)
A 		7
avr 2.3
(-3) 		2.4
(-2.9) 		8.9
(3) 		2.8
(-2.5) 		2.4
(-2.9) 		5.7
(0.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184770_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2762
Sequence Type Exemplar sequence
Representative Public ID C50E10.8 NCBI
Target Description C50E10.8 /REP_DB=WormBase Gene ID /WP=CE19762 /TR=Q9TZJ6 /GB=AAC67439.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064216(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064216 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-56) (sre-56) mRNA, complete cds. 11/11 None
GENEFINDER00000034846 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12325447:12327417:1 11/11 None
C50E10.8 ENSEMBL cdna:known chromosome:CEL140:II:12325447:12327417:1 gene:C50E10.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034841 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12325443-12327414(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sre family
Gene Symbol sre-56
Ensembl C50E10.8
Entrez Gene 183669 Entrez gene
SwissProt Q965H7 EMBL-EBI
WormBase CE19762 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_496617 Serpentine Receptor, class E (epsilon) family member (sre-56) [Caenorhabditis elegans] gb|AAK73867.1| Serpentine receptor, class e (epsilon) protein 56 [Caenorhabditis elegans] 1.0E-180
blast NP_496616 Serpentine Receptor, class E (epsilon) family member (sre-53) [Caenorhabditis elegans] gb|AAK73862.2| Serpentine receptor, class e (epsilon) protein 53 [Caenorhabditis elegans] 6.0E-90
blast NP_496618 Serpentine Receptor, class E (epsilon) family member (sre-55) [Caenorhabditis elegans] gb|AAK73866.2| Serpentine receptor, class e (epsilon) protein 55 [Caenorhabditis elegans] 8.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 5.9E-68
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496617.1 7 33-55,68-90,122-144,165-187,191-213,258-280,295-317
C50E10.8 7 33-55,68-90,122-144,165-187,191-213,258-280,295-317
GENEFINDER00000034846 7 33-55,68-90,122-144,165-187,191-213,258-280,295-317
Sequence
Target Sequence 
>C. ELEGANS:184770_AT
aacttatctactggcgctgctaattttatttcaacaaatattaatatttcttctgggcta
ctttttatttttcaaccttatacattttattacaattgtcagtgttcttgttgggctcaa
tgttttggcgatgatggtattttgtatcaatcgctggtataatttgaaagttcttcggga
atttgaacaaagaccgcgggaaagtgcaaagcattatacattgcctgtcaggtttcaggc
gaaagagaatttgagagtttttaatctcaccgccagagtatttgttgttggcttttttct
tataatccttggtttcacattttgtgtcatgataacttttgagtgggccccgtcactgga
aacattgctcattttttgcttcgagaatcttatacacttaaaccctcttatcatcaacgc
tgtgctaattctatccgttagcacttggagcaaagcactgcccaattcccggctcttcag
aaaaatctcccttattaaagttcacccaatagttccgaatcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTATCTACTGGCGCTGCTAATT 625 137 504 Antisense
TAATATTTCTTCTGGGCTACTTTTT 386 633 545 Antisense
ATTGTCAGTGTTCTTGTTGGGCTCA 243 5 598 Antisense
GTTGGGCTCAATGTTTTGGCGATGA 110 437 613 Antisense
TAATCTCACCGCCAGAGTATTTGTT 452 635 765 Antisense
GTTGGCTTTTTTCTTATAATCCTTG 249 435 790 Antisense
TAATCCTTGGTTTCACATTTTGTGT 130 637 806 Antisense
ATACACTTAAACCCTCTTATCATCA 63 25 895 Antisense
ATCAACGCTGTGCTAATTCTATCCG 379 27 916 Antisense
CCCGGCTCTTCAGAAAAATCTCCCT 610 257 971 Antisense
GTTCACCCAATAGTTCCGAATCACA 474 443 1003 Antisense
Sequence Source Affymetrix Proprietary Database