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[184769_at]

Description W08E12.2 /REP_DB=WormBase Gene ID /WP=CE21279 /TR=Q9N5B0 /GB=AAF39989.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 74      6grp_highest_nonorm > 91      6grp_total > 64      4grp_total > 42      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 620
1 2 3 4 range
A 3.5
(-3)
A 		581.8
(3)
P 		301
(0.1)
P 		46.5
(-2.6)
A 		578
B 8.5
(-3)
A 		548.8
(3)
P 		194.5
(-0.9)
P 		5.3
(-3)
A 		544
C 7.1
(-3)
A 		623.3
(3)
P 		312.8
(-0)
P 		5
(-3)
A 		618
avr 6.4
(-3) 		584.6
(3) 		269.4
(-0.3) 		18.9
(-2.9) 		578

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 146.7
(-3)
P 		214.9
(-1.4)
P 		407.4
(3)
P 		212.5
(-1.5)
P 		160.7
(-2.7)
P 		274.4
(-0.1)
P 		261
B 95.6
(-3)
P 		303
(3)
P 		280.3
(2.3)
P 		260.8
(1.8)
P 		224
(0.7)
P 		283.5
(2.4)
P 		207
C 99.8
(-3)
P 		273.1
(1.2)
P 		307.1
(2)
P 		275.3
(1.2)
P 		214.9
(-0.2)
P 		350.3
(3)
P 		251
avr 114
(-3) 		263.7
(1.1) 		331.6
(3) 		249.5
(0.7) 		199.9
(-0.6) 		302.7
(2.2) 		218
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 1.3
(-3)
A 		126.3
(3)
P 		78.7
(0.7)
P 		6.8
(-2.7)
A 		125
B 2.7
(-2.9)
A 		135.5
(3)
P 		45.1
(-1)
P 		1.1
(-3)
A 		134
C 2.3
(-2.9)
A 		179.2
(3)
P 		109
(0.6)
P 		0.8
(-3)
A 		178
avr 2.1
(-3) 		147
(3) 		77.6
(0.1) 		2.9
(-3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 27
(-3)
P 		76.4
(1.8)
P 		88.7
(3)
P 		53.9
(-0.4)
P 		48.5
(-0.9)
P 		66.8
(0.9)
P 		62
B 33.3
(-3)
P 		100.9
(2.6)
P 		68.1
(-0.1)
P 		69.1
(-0)
P 		91
(1.8)
P 		105.7
(3)
P 		72
C 37
(-3)
P 		83.3
(0.5)
P 		78.2
(0.1)
P 		55.4
(-1.6)
P 		69.5
(-0.6)
P 		117.3
(3)
P 		80
avr 32.4
(-3) 		86.9
(2.1) 		78.3
(1.3) 		59.5
(-0.5) 		69.7
(0.5) 		96.6
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184769_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10972
Sequence Type Exemplar sequence
Representative Public ID W08E12.2 NCBI
Target Description W08E12.2 /REP_DB=WormBase Gene ID /WP=CE21279 /TR=Q9N5B0 /GB=AAF39989.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067915(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067915 NCBI Caenorhabditis elegans W08E12.2 (W08E12.2) mRNA, complete cds. 11/11 None
SNAP00000023324 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3305894:3306537:1 11/11 None
GENEFINDER00000023332 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3305894:3306537:1 11/11 None
W08E12.2 ENSEMBL cdna:known chromosome:CEL140:IV:3305894:3306537:1 gene:W08E12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3305899-3306543(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W08E12.2
Entrez Gene 189291 Entrez gene
SwissProt Q9N5B0 EMBL-EBI
WormBase CE21279 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Sequence
Target Sequence 
>C. ELEGANS:184769_AT
tcgtgcaacccatgcaacgggggaggatgtgctccaagatgcagctactgcccaaataac
tttgggtactcttcgtgttgcaatagcaataacttctcctgctgtggctaccgtttccgt
cgtaacattgtcaaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTGCAACCCATGCAACGGGGGAG 672 599 208 Antisense
GCAACCCATGCAACGGGGGAGGATG 422 319 212 Antisense
GCAACGGGGGAGGATGTGCTCCAAG 426 319 221 Antisense
TGTGCTCCAAGATGCAGCTACTGCC 387 557 235 Antisense
TGCAGCTACTGCCCAAATAACTTTG 234 579 247 Antisense
CAAATAACTTTGGGTACTCTTCGTG 90 189 260 Antisense
AACTTTGGGTACTCTTCGTGTTGCA 98 137 265 Antisense
GGTACTCTTCGTGTTGCAATAGCAA 648 503 272 Antisense
GCAATAGCAATAACTTCTCCTGCTG 174 323 287 Antisense
AGCAATAACTTCTCCTGCTGTGGCT 697 75 292 Antisense
GTTTCCGTCGTAACATTGTCAAGGC 589 449 320 Antisense
Sequence Source Affymetrix Proprietary Database