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[184766_at] 7TM chemoreceptor, str family

Description Y9C9A.10 /REP_DB=WormBase Gene ID /WP=CE25645 /TR=Q9N2T5 /GB=AAF60934.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 18      6grp_cgc > 99      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 2
(-3)
A 		18.8
(3)
A 		3
(-2.6)
A 		8
(-0.9)
A 		17
B 7.7
(-2.1)
A 		4.9
(-3)
A 		5.7
(-2.7)
A 		22.6
(3)
A 		18
C 3.8
(-2.5)
A 		1.6
(-3)
A 		7.3
(-1.8)
A 		30.3
(3)
A 		29
avr 4.5
(-3) 		8.4
(-1.5) 		5.3
(-2.7) 		20.3
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 2.1
(-3)
A 		3.4
(-2.8)
A 		3.2
(-2.8)
A 		4
(-2.7)
A 		38.7
(3)
A 		5
(-2.5)
A 		37
B 4.2
(-2.5)
A 		15.2
(-0.5)
A 		2.4
(-2.8)
A 		3
(-2.7)
A 		35.1
(3)
A 		1.2
(-3)
A 		34
C 13
(3)
A 		3.2
(-2.8)
A 		2.9
(-3)
A 		3.1
(-2.9)
A 		9.7
(1)
A 		3.3
(-2.8)
A 		10
avr 6.4
(-2.1) 		7.3
(-1.9) 		2.8
(-3) 		3.4
(-2.9) 		27.8
(3) 		3.2
(-2.9) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.7
(-3)
A 		4.1
(3)
A 		0.8
(-2.8)
A 		1.2
(-2.1)
A 		3
B 2.4
(-1)
A 		1.2
(-3)
A 		1.3
(-2.8)
A 		4.8
(3)
A 		4
C 1.3
(-2)
A 		0.5
(-3)
A 		2.5
(-0.4)
A 		5.1
(3)
A 		5
avr 1.5
(-3) 		1.9
(-1.9) 		1.5
(-3) 		3.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.2
(-2.6)
A 		0.7
(-2.8)
A 		1
(-2.7)
A 		11.7
(3)
A 		1.2
(-2.6)
A 		11
B 1.5
(-2.5)
A 		5.1
(-1)
A 		0.6
(-2.9)
A 		0.8
(-2.8)
A 		14.3
(3)
A 		0.4
(-3)
A 		14
C 4.8
(3)
A 		1
(-2.4)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		3.2
(0.7)
A 		1.1
(-2.3)
A 		4
avr 2.2
(-2) 		2.4
(-1.9) 		0.7
(-3) 		0.8
(-2.9) 		9.7
(3) 		0.9
(-2.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184766_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11126
Sequence Type Exemplar sequence
Representative Public ID Y9C9A.10 NCBI
Target Description Y9C9A.10 /REP_DB=WormBase Gene ID /WP=CE25645 /TR=Q9N2T5 /GB=AAF60934.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068273(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068273 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-155) (str-155) mRNA, complete cds. 11/11 None
SNAP00000021390 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4916775:4917543:1 9/11 None
GENEFINDER00000021404 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4916090:4917543:1 11/11 None
Y9C9A.10 ENSEMBL cdna:known chromosome:CEL140:IV:4915979:4917543:1 gene:Y9C9A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4915984-4917549(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-155
Ensembl Y9C9A.10
Entrez Gene 189415 Entrez gene
SwissProt Q9N2T5 EMBL-EBI
WormBase CE25645 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500674 Seven TM Receptor family member (str-155) [Caenorhabditis elegans] gb|AAF60934.1| Seven tm receptor protein 155 [Caenorhabditis elegans] 1.0E-167
blast NP_500674 Seven TM Receptor family member (str-155) [Caenorhabditis elegans] gb|AAF60934.1| Seven tm receptor protein 155 [Caenorhabditis elegans] 1.0E-157
blast NP_500673 Seven TM Receptor family member (str-156) [Caenorhabditis elegans] gb|AAF60935.2| Seven tm receptor protein 156 [Caenorhabditis elegans] 1.0E-145
blast NP_500673 Seven TM Receptor family member (str-156) [Caenorhabditis elegans] gb|AAF60935.2| Seven tm receptor protein 156 [Caenorhabditis elegans] 1.0E-136
blast AAF39845 Seven tm receptor protein 267 [Caenorhabditis elegans] ref|NP_503699.1| Seven TM Receptor family member (str-154) [Caenorhabditis elegans] gb|AAF60586.1| Seven tm receptor protein 154 [Caenorhabditis elegans] 1.0E-125
blast AAF39845 Seven tm receptor protein 267 [Caenorhabditis elegans] ref|NP_503699.1| Seven TM Receptor family member (str-154) [Caenorhabditis elegans] gb|AAF60586.1| Seven tm receptor protein 154 [Caenorhabditis elegans] 1.0E-116
blast NP_500674 Seven TM Receptor family member (str-155) [Caenorhabditis elegans] gb|AAF60934.1| Seven tm receptor protein 155 [Caenorhabditis elegans] 1.0E-107
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500674.1 7 10-32,45-67,91-113,134-156,202-224,253-275,285-307
Y9C9A.10 7 10-32,45-67,91-113,134-156,202-224,253-275,285-307
SNAP00000021390 3 56-78,107-129,139-161
GENEFINDER00000021404 6 7-29,54-76,97-119,165-187,216-238,248-270
Sequence
Target Sequence 
>C. ELEGANS:184766_AT
cttgttttctggatttctttgtctatcattggtggaatcatgacagggcttaccttctat
gccataggttctcgtcaagaaatttcacatggtttgagagagaatttggaaacgatgtat
gatttggatatgcatcgaacacaatattgggtatttttgtattggcaacccaaagatgga
aatcaagatttgacagcaaaagatattatggcaaatttggggcttaccacatcaatggta
attcctattcttctcatcgtctttttcggaacaaagacttatcgaaaagtcaagaatctg
acaactcatggaaaaagtgaatactcaaagcggcttcaaatgcaactttacaaagctctt
gtcgcacagataattattccatctgttttcctgtttctcccgactttattaattgctgca
ggtccacttttcaagcttaatattccatgggctagtcttccattatctattttattttca
atgttctcagttatggattcaattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGTTTTCTGGATTTCTTTGTCTA 627 217 412 Antisense
GGAATCATGACAGGGCTTACCTTCT 550 533 445 Antisense
CAGGGCTTACCTTCTATGCCATAGG 107 207 455 Antisense
CTTCTATGCCATAGGTTCTCGTCAA 687 219 465 Antisense
GAAATTTCACATGGTTTGAGAGAGA 158 363 490 Antisense
GATTTGGATATGCATCGAACACAAT 404 425 532 Antisense
TATGCATCGAACACAATATTGGGTA 644 655 540 Antisense
TTTGTATTGGCAACCCAAAGATGGA 357 667 567 Antisense
GGCAAATTTGGGGCTTACCACATCA 68 535 621 Antisense
ATTTGGGGCTTACCACATCAATGGT 427 9 626 Antisense
ATGTTCTCAGTTATGGATTCAATTC 468 47 892 Antisense
Sequence Source Affymetrix Proprietary Database