[Home] | [Total List]

[184765_at]

Description F40G9.10 /REP_DB=WormBase Gene ID /WP=CE19857 /TR=Q9TZ75 /GB=AAC68804.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 35      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.8
(-2.7)
A 		2.9
(-2.6)
A 		2.5
(-3)
A 		8.8
(3)
A 		6
B 3.2
(-1)
A 		3.1
(-1.3)
A 		4.8
(3)
A 		2.4
(-3)
A 		2
C 5.3
(-0)
A 		9.5
(3)
A 		1.2
(-3)
A 		2.6
(-2)
A 		8
avr 3.8
(-0.5) 		5.2
(3) 		2.8
(-3) 		4.6
(1.5) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3.3
(-2.3)
A 		3.2
(-2.4)
A 		4.1
(-2)
A 		4.2
(-1.9)
A 		15.9
(3)
A 		1.7
(-3)
A 		14
B 4.6
(0.2)
A 		3.4
(-1.1)
A 		1.6
(-2.9)
A 		7.4
(3)
A 		1.5
(-3)
A 		4.4
(-0.1)
A 		6
C 1.4
(-2.9)
A 		4.1
(-2.1)
A 		1.7
(-2.8)
A 		1.1
(-3)
A 		16.3
(1.4)
A 		21.9
(3)
A 		21
avr 3.1
(-2.6) 		3.6
(-2.2) 		2.5
(-3) 		4.2
(-1.8) 		11.2
(3) 		9.3
(1.7) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1
(0.4)
A 		0.6
(-3)
A 		0.6
(-3)
A 		1.3
(3)
A 		1
B 1
(2)
A 		0.8
(0)
A 		1.1
(3)
A 		0.5
(-3)
A 		1
C 1.8
(0.7)
A 		2.7
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		2
avr 1.3
(2.1) 		1.4
(3) 		0.7
(-3) 		0.7
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.6
(-2.7)
A 		1.1
(-2)
A 		0.9
(-2.3)
A 		1.1
(-2)
A 		4.8
(3)
A 		0.4
(-3)
A 		4
B 1.6
(1.5)
A 		1.1
(-0.4)
A 		0.4
(-3)
A 		2
(3)
A 		0.6
(-2.3)
A 		1.6
(1.5)
A 		2
C 0.5
(-2.7)
A 		1.2
(-2.2)
A 		0.4
(-2.8)
A 		0.2
(-3)
A 		5.3
(1.3)
A 		7.3
(3)
A 		7
avr 0.9
(-2.4) 		1.1
(-2) 		0.6
(-3) 		1.1
(-2) 		3.6
(3) 		3.1
(2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184765_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8240
Sequence Type Exemplar sequence
Representative Public ID F40G9.10 NCBI
Target Description F40G9.10 /REP_DB=WormBase Gene ID /WP=CE19857 /TR=Q9TZ75 /GB=AAC68804.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064767(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064767 NCBI Caenorhabditis elegans F40G9.10 (F40G9.10) mRNA, complete cds. 11/11 None
F40G9.10 ENSEMBL cdna:known chromosome:CEL140:III:174608:175832:-1 gene:F40G9.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021768 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021791 2/11 Cross Hyb Matching Probes None
SNAP00000021769 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:174607-175832(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40G9.10
Entrez Gene 185558 Entrez gene
SwissProt Q9TZ75 EMBL-EBI
WormBase CE19857 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68804 Hypothetical protein F40G9.10 [Caenorhabditis elegans] ref|NP_497168.1| F40G9.10 [Caenorhabditis elegans] 1.0E-100
blast CAE58427 Hypothetical protein CBG01558 [Caenorhabditis briggsae] 4.0E-44
blast NP_491247 C-type LECtin family member (clec-53) [Caenorhabditis elegans] gb|AAB42238.2| Hypothetical protein T03F1.10 [Caenorhabditis elegans] 6.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.4E-17
Sequence
Target Sequence 
>C. ELEGANS:184765_AT
accttccttccatcagtggtgtttagtgcatcatttccctccttctttaatgaatcggca
tatgaaacctctggtcacaaaccagaaatctatcaattagaatactccggtggatgcatt
tctgggtacacctggttttcttacacaaatttttgctataagagtactgctagagccgca
aacttcaatgatgctcacaatgcttgtaggagtgaaggatctgagctagcatcaatccat
tcactgacggagaatcaattcctcgttcagctatcagccgctggcaaccgagtcaatagc
aaaaccaattacgtcatgatcggattaatcttcgaaaaccgggaatggtcgtggacagac
ggaagttcagttaactacctcaattgggcagctggagagccaaataatatgaagcatgag
ttatggactgcgctagtttccgatgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTTCCTTCCATCAGTGGTGTTTA 263 85 40 Antisense
GTGGTGTTTAGTGCATCATTTCCCT 86 489 55 Antisense
ATTTCCCTCCTTCTTTAATGAATCG 143 17 72 Antisense
GAATCGGCATATGAAACCTCTGGTC 580 327 91 Antisense
ACTCCGGTGGATGCATTTCTGGGTA 388 97 143 Antisense
TGGGTACACCTGGTTTTCTTACACA 669 553 162 Antisense
GAGCTAGCATCAATCCATTCACTGA 219 389 262 Antisense
GGAGAATCAATTCCTCGTTCAGCTA 434 519 288 Antisense
GCCGCTGGCAACCGAGTCAATAGCA 541 285 316 Antisense
TAACTACCTCAATTGGGCAGCTGGA 485 637 411 Antisense
ATGGACTGCGCTAGTTTCCGATGTG 515 51 462 Antisense
Sequence Source Affymetrix Proprietary Database