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[184764_at] 7TM chemoreceptor, sre family

Description C50E10.6 /REP_DB=WormBase Gene ID /WP=CE19760 /TR=Q9TZJ8 /GB=AAC67437.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 19      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 37
(-0.6)
A 		80.6
(3)
A 		7.1
(-3)
A 		66
(1.8)
A 		74
B 36.2
(0.4)
A 		53.7
(2.3)
A 		6.1
(-3)
A 		60
(3)
A 		54
C 28.4
(-2)
A 		2.6
(-3)
A 		5.8
(-2.9)
A 		152.9
(3)
P 		150
avr 33.9
(-1.1) 		45.6
(-0.3) 		6.3
(-3) 		93
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 39.3
(0.2)
A 		30.5
(-0.7)
A 		67.9
(3)
A 		27.8
(-1)
A 		44.6
(0.7)
A 		7
(-3)
A 		61
B 33.1
(1.8)
A 		27
(0.9)
A 		25.2
(0.6)
A 		40.6
(3)
A 		1.6
(-3)
A 		26.7
(0.9)
A 		39
C 7.3
(-2.3)
A 		41
(3)
P 		2.9
(-3)
A 		26.6
(0.7)
A 		15.9
(-1)
A 		25
(0.5)
A 		38
avr 26.6
(0.2) 		32.8
(3) 		32
(2.6) 		31.7
(2.5) 		20.7
(-2.5) 		19.6
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 13.5
(1.5)
A 		17.5
(3)
A 		1.9
(-3)
A 		9.7
(-0)
A 		16
B 11.5
(2.1)
A 		13.3
(3)
A 		1.4
(-3)
A 		12.8
(2.7)
A 		12
C 9.4
(-0.9)
A 		0.7
(-3)
A 		2
(-2.7)
A 		25.8
(3)
P 		25
avr 11.5
(1.1) 		10.5
(0.7) 		1.8
(-3) 		16.1
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 7.3
(-0.4)
A 		10.9
(1.2)
A 		14.8
(3)
A 		7.1
(-0.5)
A 		13.5
(2.4)
A 		1.7
(-3)
A 		13
B 11.5
(3)
A 		9
(1.6)
A 		6.1
(-0)
A 		10.8
(2.6)
A 		0.7
(-3)
A 		9.9
(2.1)
A 		11
C 2.7
(-2)
A 		12.5
(3)
P 		0.7
(-3)
A 		5.4
(-0.6)
A 		5.1
(-0.8)
A 		8.4
(0.9)
A 		12
avr 7.2
(-1.9) 		10.8
(3) 		7.2
(-1.9) 		7.8
(-1.1) 		6.4
(-3) 		6.7
(-2.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184764_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3045
Sequence Type Exemplar sequence
Representative Public ID C50E10.6 NCBI
Target Description C50E10.6 /REP_DB=WormBase Gene ID /WP=CE19760 /TR=Q9TZJ8 /GB=AAC67437.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064218(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064218 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-54) (sre-54) mRNA, complete cds. 11/11 None
C50E10.6 ENSEMBL cdna:known chromosome:CEL140:II:12332827:12334947:1 gene:C50E10.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034850 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12332823-12334355(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sre family
Gene Symbol sre-54
Ensembl C50E10.6
Entrez Gene 183667 Entrez gene
SwissProt Q965H5 EMBL-EBI
WormBase CE38058 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_496619 Serpentine Receptor, class E (epsilon) family member (sre-54) [Caenorhabditis elegans] gb|AAK73865.2| Serpentine receptor, class e (epsilon) protein 54 [Caenorhabditis elegans] 0.0
blast NP_496617 Serpentine Receptor, class E (epsilon) family member (sre-56) [Caenorhabditis elegans] gb|AAK73867.1| Serpentine receptor, class e (epsilon) protein 56 [Caenorhabditis elegans] 3.0E-94
blast NP_496616 Serpentine Receptor, class E (epsilon) family member (sre-53) [Caenorhabditis elegans] gb|AAK73862.2| Serpentine receptor, class e (epsilon) protein 53 [Caenorhabditis elegans] 2.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 7.7E-65
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496619.2 7 32-54,61-80,125-147,167-189,194-216,261-283,303-325
C50E10.6 7 32-54,61-80,125-147,167-189,194-216,261-283,303-325
Sequence
Target Sequence 
>C. ELEGANS:184764_AT
tcgacaggtgctctacgcctaaataacgcctcaacagacctacacaaaccttactggaca
gatgacgtagcaagaatggtccacgtggaggatatcggggaggcgtggcctctgtttgtg
ggcggggttttgacgtggtattatatgatgatgatgtccacgtgtatatttgttgtgtcg
ctggagcgactttgcgcggtgtattttattgaaaattatgagaatttacccagaatatat
ctactcttctttttaattatattccaacagtttttaatcataactgcagtgtattttcta
ttctacaatcggcttaaattcatacctgctgtcacgttgctcactagatataacctaaaa
attatgagacagtttggtcagaaacctgcgaaaaatttaagagctgggaattttacgctg
tcggtgagatttcaggcgaaggagaatttgagggtttttgagctaacagtacgtgtattc
gtcgtggggtttattatgattctattagcagttgcgtgtatagttgtgattacctataat
ttggtgccatctatgaatacccttttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGACAGGTGCTCTACGCCTAAATA 307 601 274 Antisense
TAAATAACGCCTCAACAGACCTACA 211 641 293 Antisense
AGACCTACACAAACCTTACTGGACA 119 69 309 Antisense
TGTGGGCGGGGTTTTGACGTGGTAT 60 551 390 Antisense
GTATATTTGTTGTGTCGCTGGAGCG 281 453 437 Antisense
GCGACTTTGCGCGGTGTATTTTATT 415 289 459 Antisense
GGCTTAAATTCATACCTGCTGTCAC 188 537 584 Antisense
GCTGTCACGTTGCTCACTAGATATA 580 295 601 Antisense
GCTGGGAATTTTACGCTGTCGGTGA 121 293 676 Antisense
ACAGTACGTGTATTCGTCGTGGGGT 622 105 739 Antisense
GTGCCATCTATGAATACCCTTTTGA 133 479 817 Antisense
Sequence Source Affymetrix Proprietary Database