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[184761_at]

Description F35F11.3 /REP_DB=WormBase Gene ID /WP=CE24944 /TR=Q9N5U7 /GB=AAF39796.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 03      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 2.6
(-3)
A 		3.8
(-2.9)
A 		6
(-2.7)
A 		73.2
(3)
A 		71
B 20.5
(0.4)
A 		4.3
(-2.7)
A 		2.7
(-3)
A 		34
(3)
A 		31
C 8.4
(-2.5)
A 		4.7
(-3)
A 		8.8
(-2.4)
A 		49.4
(3)
P 		45
avr 10.5
(-2.2) 		4.3
(-3) 		5.8
(-2.8) 		52.2
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 3.6
(-2.2)
A 		4.3
(-2)
A 		18.8
(3)
A 		1.6
(-2.9)
A 		9.3
(-0.3)
A 		1.4
(-3)
A 		17
B 4.3
(-2.8)
A 		3.9
(-2.8)
A 		6.5
(-2.3)
A 		3.2
(-3)
A 		22.9
(1.3)
A 		30.4
(3)
A 		27
C 2
(-3)
A 		4
(-2.4)
A 		2.4
(-2.9)
A 		21.8
(3)
A 		3.8
(-2.5)
A 		12.6
(0.2)
A 		20
avr 3.3
(-3) 		4.1
(-2.6) 		9.2
(0.1) 		8.9
(-0.1) 		12
(1.5) 		14.8
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.9
(-2.9)
A 		0.8
(-3)
A 		1.6
(-2.5)
A 		10.7
(3)
A 		10
B 6.5
(2.4)
A 		1.1
(-2.5)
A 		0.6
(-3)
A 		7.2
(3)
A 		7
C 2.8
(-1.7)
A 		1.3
(-3)
A 		3.1
(-1.5)
A 		8.3
(3)
P 		7
avr 3.4
(-1.2) 		1.1
(-3) 		1.8
(-2.4) 		8.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.7
(-2.4)
A 		1.5
(-1.1)
A 		4.1
(3)
A 		0.4
(-2.8)
A 		2.8
(0.9)
A 		0.3
(-3)
A 		4
B 1.5
(-2.7)
A 		1.3
(-2.8)
A 		1.6
(-2.6)
A 		0.9
(-3)
A 		9.3
(1.8)
A 		11.3
(3)
A 		10
C 0.7
(-2.8)
A 		1.2
(-2.1)
A 		0.6
(-3)
A 		4.4
(3)
A 		1.2
(-2.1)
A 		4.2
(2.7)
A 		4
avr 1
(-3) 		1.3
(-2.6) 		2.1
(-1.5) 		1.9
(-1.7) 		4.4
(1.7) 		5.3
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184761_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10959
Sequence Type Exemplar sequence
Representative Public ID F35F11.3 NCBI
Target Description F35F11.3 /REP_DB=WormBase Gene ID /WP=CE24944 /TR=Q9N5U7 /GB=AAF39796.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068062(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068062 NCBI Caenorhabditis elegans F35F11.3 (F35F11.3) mRNA, complete cds. 11/11 None
F35F11.3 ENSEMBL cdna:known chromosome:CEL140:IV:4037903:4038731:1 gene:F35F11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034667 4/11 Cross Hyb Matching Probes None
GENEFINDER00000034672 2/11 Cross Hyb Matching Probes None
GENEFINDER00000034674 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4037908-4038737(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35F11.3
Entrez Gene 185318 Entrez gene
SwissProt Q9N5U7 EMBL-EBI
WormBase CE24944 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39796 Hypothetical protein F35F11.3 [Caenorhabditis elegans] ref|NP_500463.1| F35F11.3 [Caenorhabditis elegans] 1.0E-130
blast AAK31412 Hypothetical protein C16A11.6 [Caenorhabditis elegans] ref|NP_494746.2| C16A11.6 [Caenorhabditis elegans] 2.0E-40
blast AAF59576 Hypothetical protein Y54G2A.22 [Caenorhabditis elegans] ref|NP_500271.2| Y54G2A.22 [Caenorhabditis elegans] 3.0E-26
Sequence
Target Sequence 
>C. ELEGANS:184761_AT
gttatctctgattgttactcgctggatttgctgaatgtgattaatcgacacgaaatcttg
agaacttctgaaggattgatgcctcatattgttcctcgtgttgaagttttcgattttctc
attttgattgacgctttgctccaacaagaccgtggaattgacacagaccgtaacttcatc
actgagaatgtcgatttggtcgcgaatctattcaaagcaatcaatttactagcagaagga
aacgatcctgcaatttttgaatatgaagatggagaagatgataattttgaagatgagtgc
accagatgcgatgaattcccgaacaatattgatttctggatcaacgatacgaccatttct
cttcgtgctgagaagaacaaagtggaaaacaatcttatcgtattcatagagtttaacaaa
ggcgaaaaatctttactcgaactaacattttttgtaatatatttacttgatttcttcagc
atgactcacaggcacgacatatttacgatggcccttttattttggagaaagttggatttt
cattttttcgcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATCTCTGATTGTTACTCGCTGG 576 447 97 Antisense
GTTACTCGCTGGATTTGCTGAATGT 150 447 110 Antisense
ATTGTTCCTCGTGTTGAAGTTTTCG 673 1 184 Antisense
GACACAGACCGTAACTTCATCACTG 631 365 256 Antisense
CAGATGCGATGAATTCCCGAACAAT 53 207 399 Antisense
GATCAACGATACGACCATTTCTCTT 663 421 435 Antisense
CGACCATTTCTCTTCGTGCTGAGAA 86 251 446 Antisense
GATTTCTTCAGCATGACTCACAGGC 577 427 565 Antisense
GCACGACATATTTACGATGGCCCTT 343 315 588 Antisense
TACGATGGCCCTTTTATTTTGGAGA 2 649 600 Antisense
GTTGGATTTTCATTTTTTCGCAATT 311 437 627 Antisense
Sequence Source Affymetrix Proprietary Database