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[184760_at]

Description F36A4.11 /REP_DB=WormBase Gene ID /WP=CE07186 /TR=Q20088 /GB=AAA96156.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 17      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 31.4
(-0.9)
A 		10.7
(-3)
A 		43.1
(0.3)
A 		69.6
(3)
A 		59
B 8.4
(-2.8)
A 		61
(3)
A 		7
(-3)
A 		53.7
(2.2)
A 		54
C 6.3
(-3)
A 		24.7
(-2)
A 		24.6
(-2)
A 		116.3
(3)
A 		110
avr 15.4
(-3) 		32.1
(-1.4) 		24.9
(-2.1) 		79.9
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 22.7
(-1.2)
A 		6.4
(-3)
A 		56.3
(2.6)
A 		59.7
(3)
A 		26.8
(-0.7)
A 		7.9
(-2.8)
A 		53
B 24.6
(-0.1)
A 		4.3
(-2.7)
A 		27.8
(0.3)
A 		48.5
(3)
A 		29.3
(0.5)
A 		2.2
(-3)
A 		46
C 6.5
(-2.7)
A 		43.9
(1.6)
A 		3.9
(-3)
A 		56
(3)
A 		4.2
(-3)
A 		10.1
(-2.3)
A 		52
avr 17.9
(-1.6) 		18.2
(-1.6) 		29.3
(-0.2) 		54.7
(3) 		20.1
(-1.3) 		6.7
(-3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 11.4
(3)
A 		2.3
(-3)
A 		11.3
(2.9)
A 		10.2
(2.2)
A 		9
B 2.7
(-2.5)
A 		15.1
(3)
A 		1.6
(-3)
A 		11.4
(1.4)
A 		14
C 2.1
(-3)
A 		7.1
(-1.3)
A 		8.6
(-0.8)
A 		19.6
(3)
A 		18
avr 5.4
(-3) 		8.2
(-1) 		7.2
(-1.7) 		13.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 4.2
(-2)
A 		2.3
(-2.8)
A 		12.3
(1.7)
A 		15.1
(3)
A 		8.1
(-0.2)
A 		1.9
(-3)
A 		13
B 8.6
(0.9)
A 		1.4
(-2.7)
A 		6.8
(-0)
A 		12.9
(3)
A 		11.9
(2.5)
A 		0.8
(-3)
A 		12
C 2.4
(-2.3)
A 		13.4
(3)
A 		1
(-3)
A 		11.3
(2)
A 		1.4
(-2.8)
A 		3.4
(-1.8)
A 		12
avr 5.1
(-1.3) 		5.7
(-1) 		6.7
(-0.5) 		13.1
(3) 		7.1
(-0.2) 		2
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184760_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10460
Sequence Type Exemplar sequence
Representative Public ID F36A4.11 NCBI
Target Description F36A4.11 /REP_DB=WormBase Gene ID /WP=CE07186 /TR=Q20088 /GB=AAA96156.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068120(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068120 NCBI Caenorhabditis elegans F36A4.11 (F36A4.11) mRNA, complete cds. 11/11 None
GENEFINDER00000033277 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4244949:4245697:-1 11/11 None
F36A4.11 ENSEMBL cdna:known chromosome:CEL140:IV:4244949:4245613:-1 gene:F36A4.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4244954-4245619(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36A4.11
Entrez Gene 185343 Entrez gene
SwissProt Q20088 EMBL-EBI
WormBase CE07186 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96156 Hypothetical protein F36A4.11 [Caenorhabditis elegans] ref|NP_500521.1| F36A4.11 [Caenorhabditis elegans] 1.0E-51
Sequence
Target Sequence 
>C. ELEGANS:184760_AT
ggattggacttttcatgttcacttttttttgaagaagattgtgacaggtagaagtactgg
ttttggttatgtcagaggaagctggttttttttttattttctgaaaaattttacaaactc
tgtctggaagctgggaagcccaactggaccagcgggaacgcccggagcgacttcctggca
aaacctcgttcataacgacctccagaatcacaaggagatcgagccaagaccactagcatc
atcagaagctccaggagaacctgcaacaccagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTGGACTTTTCATGTTCACTTT 192 507 27 Antisense
AGAAGTACTGGTTTTGGTTATGTCA 572 73 76 Antisense
TACAAACTCTGTCTGGAAGCTGGGA 161 637 138 Antisense
GAAGCTGGGAAGCCCAACTGGACCA 47 343 153 Antisense
AGCCCAACTGGACCAGCGGGAACGC 142 83 163 Antisense
CTTCCTGGCAAAACCTCGTTCATAA 342 219 197 Antisense
GTTCATAACGACCTCCAGAATCACA 89 445 214 Antisense
CAAGGAGATCGAGCCAAGACCACTA 293 183 237 Antisense
GCCAAGACCACTAGCATCATCAGAA 363 277 249 Antisense
GCATCATCAGAAGCTCCAGGAGAAC 517 309 262 Antisense
CCAGGAGAACCTGCAACACCAGAAG 212 271 277 Antisense
Sequence Source Affymetrix Proprietary Database