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[184757_at]

Description H27D07.1 /REP_DB=WormBase Gene ID /WP=CE17980 /TR=O61911 /GB=AAG24153.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 26      6grp_cgc > 44      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 2.6
(-3)
A 		24.9
(0.8)
A 		23.2
(0.5)
A 		37.8
(3)
A 		35
B 5
(-2.4)
A 		3.8
(-2.8)
A 		3
(-3)
A 		22.9
(3)
A 		20
C 7.1
(-2.3)
A 		50.7
(2.3)
A 		0.6
(-3)
A 		57.2
(3)
M 		57
avr 4.9
(-3) 		26.5
(0.8) 		8.9
(-2.3) 		39.3
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 6.6
(-2.4)
A 		21.9
(-0.5)
A 		34.3
(1)
A 		2.1
(-3)
A 		50.3
(3)
A 		38.5
(1.5)
A 		48
B 27
(3)
A 		21.8
(1.8)
A 		25.6
(2.7)
A 		1.3
(-3)
A 		1.6
(-2.9)
A 		2.1
(-2.8)
A 		26
C 5.8
(-0.9)
A 		15.2
(3)
A 		5.3
(-1.1)
A 		0.8
(-3)
A 		1.9
(-2.5)
A 		2.6
(-2.3)
A 		14
avr 13.1
(0.5) 		19.6
(2.4) 		21.7
(3) 		1.4
(-3) 		17.9
(1.9) 		14.4
(0.8) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1
(-3)
A 		5.4
(2.2)
A 		6.1
(3)
A 		5.5
(2.3)
A 		5
B 1.6
(-1.7)
A 		0.9
(-2.7)
A 		0.7
(-3)
A 		4.9
(3)
A 		4
C 2.4
(-2.1)
A 		14.6
(3)
A 		0.2
(-3)
A 		9.6
(0.9)
M 		14
avr 1.7
(-3) 		7
(3) 		2.3
(-2.3) 		6.7
(2.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.2
(-2.7)
A 		7.8
(-0)
A 		7.5
(-0.1)
A 		0.5
(-3)
A 		15.2
(3)
A 		9.4
(0.6)
A 		15
B 9.4
(3)
A 		7.3
(1.6)
A 		6.2
(0.9)
A 		0.3
(-3)
A 		0.7
(-2.7)
A 		0.8
(-2.7)
A 		9
C 2.2
(-0.3)
A 		4.6
(3)
A 		1.4
(-1.4)
A 		0.2
(-3)
A 		0.6
(-2.5)
A 		0.9
(-2)
A 		4
avr 4.3
(0.8) 		6.6
(3) 		5
(1.5) 		0.3
(-3) 		5.5
(2) 		3.7
(0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184757_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14890
Sequence Type Exemplar sequence
Representative Public ID H27D07.1 NCBI
Target Description H27D07.1 /REP_DB=WormBase Gene ID /WP=CE17980 /TR=O61911 /GB=AAG24153.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000017835 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2947509:2948090:1 9/11 None
H27D07.1 ENSEMBL cdna:pseudogene chromosome:CEL140:V:2946640:2948243:1 gene:H27D07.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017834 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2946672-2948243(+) 98.66 98.66
Public Domain and Genome References
Ensembl H27D07.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T33245 hypothetical protein H27D07.1 - Caenorhabditis elegans 1.0E-72
blast AAG23983 Serpentine receptor, class w protein 129 [Caenorhabditis elegans] ref|NP_503809.1| Serpentine Receptor, class W family member (srw-129) [Caenorhabditis elegans] 3.0E-65
blast AAC17762 Serpentine receptor, class w protein 142 [Caenorhabditis elegans] ref|NP_503804.2| Serpentine Receptor, class W family member (srw-142) [Caenorhabditis elegans] 9.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000017835 2 51-73,103-125
Sequence
Target Sequence 
>C. ELEGANS:184757_AT
aatggactttttgtacgaatgtgttcgagttataaatggaaaacaatatgttatggttat
ctccaagttttaccggcataacaaagtacttatagaatttctggagacgctcaattctct
tatttccaaaattagtccttgtctgctttttccgatagtcacaatatttttaattcgaga
aatcaaaaaagctgatgaaaacagaagaaaaatatcatcctcttcttcggccaagacttc
ggattctcgaaaaacatctcgattggtgttatacatgacagttatgttcttcgtttccgg
ttttccatacagtgtaaactctgtagttggctactattttgtacatgttcccggtatatg
gcaaatcctacaacagatcgggttcatgctgtcacttttattaaagttgaacacaatgtc
ccattttgttgtatgtctttgtatgtcacatcaatatcggcaaactgcaattggtatctt
attctgtggacatttagcatttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGACTTTTTGTACGAATGTGTT 238 159 549 Antisense
TCCAAAATTAGTCCTTGTCTGCTTT 112 587 673 Antisense
TCTGCTTTTTCCGATAGTCACAATA 192 609 690 Antisense
TCTTCTTCGGCCAAGACTTCGGATT 15 617 769 Antisense
TACATGACAGTTATGTTCTTCGTTT 110 645 820 Antisense
TTCGTTTCCGGTTTTCCATACAGTG 157 659 838 Antisense
GTGTAAACTCTGTAGTTGGCTACTA 618 485 860 Antisense
GCTACTATTTTGTACATGTTCCCGG 674 301 878 Antisense
ACAGATCGGGTTCATGCTGTCACTT 613 107 921 Antisense
TTTGTTGTATGTCTTTGTATGTCAC 384 667 973 Antisense
ATTCTGTGGACATTTAGCATTTCAA 121 11 1029 Antisense
Sequence Source Affymetrix Proprietary Database