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[184756_at]

Description Y51A2A.10 /REP_DB=WormBase Gene ID /WP=CE22323 /TR=Q9XWP8 /GB=CAA21602.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 09      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 2.7
(-3)
A 		7.6
(-2.6)
A 		2.8
(-3)
A 		83.4
(3)
A 		81
B 5.4
(-2.7)
A 		2.4
(-3)
A 		16.1
(-1.5)
A 		57.3
(3)
A 		55
C 2.6
(-2.7)
A 		4.5
(-1.9)
A 		2
(-3)
A 		15.7
(3)
A 		14
avr 3.6
(-3) 		4.8
(-2.9) 		7
(-2.6) 		52.1
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2.8
(-3)
A 		4.1
(-1.3)
A 		6.3
(1.7)
A 		7.3
(3)
A 		3.4
(-2.2)
A 		5.4
(0.5)
A 		5
B 1.9
(-3)
A 		3.3
(-0.5)
A 		2.5
(-1.9)
A 		5.2
(3)
A 		3.7
(0.3)
A 		2
(-2.8)
A 		3
C 4.1
(0.6)
A 		5.2
(3)
A 		2.4
(-3)
A 		2.8
(-2.1)
A 		3
(-1.7)
A 		4.3
(1.1)
A 		3
avr 2.9
(-3) 		4.2
(0.5) 		3.7
(-0.8) 		5.1
(3) 		3.4
(-1.6) 		3.9
(-0.3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1
(-2.8)
A 		1.7
(-2.5)
A 		0.7
(-3)
A 		12.2
(3)
A 		12
B 1.7
(-2.4)
A 		0.6
(-3)
A 		3.7
(-1.4)
A 		12.2
(3)
A 		12
C 0.9
(-2.4)
A 		1.3
(-1.1)
A 		0.7
(-3)
A 		2.6
(3)
A 		2
avr 1.2
(-3) 		1.2
(-3) 		1.7
(-2.6) 		9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.5
(1.3)
A 		1.4
(0.9)
A 		1.9
(3)
A 		1
(-0.9)
A 		1.3
(0.4)
A 		1
B 0.7
(-2.3)
A 		1.1
(0.3)
A 		0.6
(-3)
A 		1.4
(2.3)
A 		1.5
(3)
A 		0.7
(-2.3)
A 		1
C 1.5
(2.4)
A 		1.6
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		1
(-0.6)
A 		1.4
(1.8)
A 		1
avr 0.9
(-3) 		1.4
(3) 		0.9
(-3) 		1.3
(1.8) 		1.2
(0.6) 		1.1
(-0.6) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184756_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14211
Sequence Type Exemplar sequence
Representative Public ID Y51A2A.10 NCBI
Target Description Y51A2A.10 /REP_DB=WormBase Gene ID /WP=CE22323 /TR=Q9XWP8 /GB=CAA21602.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000039476 ENSEMBL cdna:SNAP chromosome:CEL140:V:18312245:18318086:-1 None
GENEFINDER00000039478 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18317446:18317826:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014508 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18317445-18317909(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T27060 hypothetical protein Y51A2A.10 - Caenorhabditis elegans 1.0E-56
blast T27060 hypothetical protein Y51A2A.10 - Caenorhabditis elegans 2.0E-34
blast CAB16484 Hypothetical protein Y53C12A.1 [Caenorhabditis elegans] ref|NP_496095.1| WEE homolog family member (wee-1.3) [Caenorhabditis elegans] sp|O18209|PMYT1_CAEEL Membrane-associated tyrosine-and threonine-specific cdc2-inhibitory kinase (Myt1 kinase) (Lethal protein 37) 1.0E-31
Sequence
Target Sequence 
>C. ELEGANS:184756_AT
aaatttacatttcctacacaatccagcaaggaactccaagatcagctcgtcgtaatctca
ctttcaaccgtcatcgtcaagcagctgcatcagttgcaccgaaatcgtctctgaatcatt
ataatcatcacactggatctggagatggattcagtaataattccctaatcccaataagtg
atcaagaacgaacggaaaaatatttccgaatgcgactcaccgaggaacagtcagatgtat
acagacttcaaattatcgttcccgaaatgctcgacaagcaaacgcgtcctgttgaacacc
ttctgcgcacgcattcaaatttagttttttcttgcttccaaatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTTACATTTCCTACACAATCCA 292 115 35 Antisense
CCGTCATCGTCAAGCAGCTGCATCA 194 265 102 Antisense
AGCAGCTGCATCAGTTGCACCGAAA 518 77 114 Antisense
AATCGTCTCTGAATCATTATAATCA 481 169 137 Antisense
TTCAGTAATAATTCCCTAATCCCAA 143 687 184 Antisense
ATGCGACTCACCGAGGAACAGTCAG 534 41 244 Antisense
ACAGACTTCAAATTATCGTTCCCGA 336 109 275 Antisense
AATGCTCGACAAGCAAACGCGTCCT 219 165 300 Antisense
CAAGCAAACGCGTCCTGTTGAACAC 280 185 309 Antisense
CACCTTCTGCGCACGCATTCAAATT 217 201 331 Antisense
TTAGTTTTTTCTTGCTTCCAAATAT 92 679 355 Antisense
Sequence Source Affymetrix Proprietary Database