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[184754_at]

Description W09G12.8 /REP_DB=WormBase Gene ID /WP=CE18347 /TR=O45199 /GB=AAC04446.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 23
(2)
A 		1.4
(-3)
A 		12.2
(-0.5)
A 		27.3
(3)
A 		26
B 6.7
(-3)
A 		37.8
(3)
A 		31.2
(1.7)
A 		17.9
(-0.8)
A 		31
C 16.3
(-3)
A 		47.8
(3)
P 		32
(-0)
A 		24.5
(-1.4)
A 		32
avr 15.3
(-3) 		29
(3) 		25.1
(1.3) 		23.2
(0.5) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 13.9
(-3)
A 		25
(0.7)
A 		18.4
(-1.5)
A 		31.8
(3)
A 		31.8
(3)
A 		21
(-0.6)
A 		18
B 27.1
(1.1)
A 		17.8
(-0.5)
A 		26.6
(1)
P 		39.1
(3)
A 		36
(2.5)
M 		2.1
(-3)
A 		37
C 31.1
(1.1)
A 		11.9
(-1.8)
A 		4.3
(-3)
A 		31.4
(1.2)
A 		43.2
(3)
P 		30
(1)
A 		39
avr 24
(-0.8) 		18.2
(-2.5) 		16.4
(-3) 		34.1
(2.2) 		37
(3) 		17.7
(-2.6) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8.4
(3)
A 		0.3
(-3)
A 		3.2
(-0.9)
A 		4
(-0.3)
A 		8
B 2.1
(-3)
A 		9.3
(3)
A 		7.2
(1.3)
A 		3.8
(-1.6)
A 		7
C 5.4
(-2.2)
A 		13.7
(3)
P 		11.1
(1.4)
A 		4.1
(-3)
A 		10
avr 5.3
(-0.9) 		7.8
(3) 		7.2
(2.1) 		4
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.6
(-3)
A 		8.9
(2.4)
A 		4
(-1.8)
A 		8.1
(1.7)
A 		9.6
(3)
A 		5.1
(-0.9)
A 		7
B 9.4
(0.7)
A 		5.9
(-0.8)
A 		6.5
(-0.5)
P 		10.4
(1.2)
A 		14.6
(3)
M 		0.8
(-3)
A 		14
C 11.5
(1.8)
A 		3.6
(-1.8)
A 		1.1
(-3)
A 		6.3
(-0.6)
A 		14
(3)
P 		10.1
(1.2)
A 		13
avr 7.8
(-0.3) 		6.1
(-1.5) 		3.9
(-3) 		8.3
(0) 		12.7
(3) 		5.3
(-2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184754_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10930
Sequence Type Exemplar sequence
Representative Public ID W09G12.8 NCBI
Target Description W09G12.8 /REP_DB=WormBase Gene ID /WP=CE18347 /TR=O45199 /GB=AAC04446.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067655(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067655 NCBI Caenorhabditis elegans W09G12.8 (W09G12.8) mRNA, complete cds. 9/11 None
SNAP00000042742 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1226182:1227696:1 9/11 None
GENEFINDER00000042744 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1226182:1227696:1 11/11 None
W09G12.8 ENSEMBL cdna:known chromosome:CEL140:IV:1226182:1227668:1 gene:W09G12.8 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1226187-1227702(+) 81.52 100.0
Public Domain and Genome References
Gene Title
Ensembl W09G12.8
Entrez Gene 189325 Entrez gene
SwissProt O45199 EMBL-EBI
WormBase CE36331 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500056 W09G12.8 [Caenorhabditis elegans] gb|AAC04446.2| Hypothetical protein W09G12.8 [Caenorhabditis elegans] 1.0E-145
blast NP_500056 W09G12.8 [Caenorhabditis elegans] gb|AAC04446.2| Hypothetical protein W09G12.8 [Caenorhabditis elegans] 1.0E-123
blast CAB57916 Hypothetical protein F56G4.5 [Caenorhabditis elegans] emb|CAB04487.2| Hypothetical protein F56G4.5 [Caenorhabditis elegans] ref|NP_492913.1| F56G4.5 [Caenorhabditis elegans] 2.0E-36
blast AAF74721 PNGase [Caenorhabditis elegans] 2.0E-36
blast CAB57916 Hypothetical protein F56G4.5 [Caenorhabditis elegans] emb|CAB04487.2| Hypothetical protein F56G4.5 [Caenorhabditis elegans] ref|NP_492913.1| F56G4.5 [Caenorhabditis elegans] 4.0E-25
blast AAF74721 PNGase [Caenorhabditis elegans] 4.0E-25
blast CAB57916 Hypothetical protein F56G4.5 [Caenorhabditis elegans] emb|CAB04487.2| Hypothetical protein F56G4.5 [Caenorhabditis elegans] ref|NP_492913.1| F56G4.5 [Caenorhabditis elegans] 3.0E-9
blast AAF74721 PNGase [Caenorhabditis elegans] 3.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 2.1E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000042742 1 197-219
Sequence
Target Sequence 
>C. ELEGANS:184754_AT
atgcaagtccattatccgatatccgatgttgctcggctaataagttttaaggtctcgaaa
cgaaacttccaaaacttgcacgaatggaacaattggatgacggcctatttgagtatggaa
cgaggagatatagatggaaatatctcatggtatttcgatcttagatcactggaaaaatcg
atcgaaaaaatggaaattcgttttgcgggatttaaacaattcgaaagggcaaaggtcgag
atgacggcccgatttggagacattggcattaaatttccgaccaatggctcgctaacattg
acagagccaaaaaatactggactactgaagattcaggcaacacttttcggagacgaacgc
ttgcttgcgttccagcaagctcagatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAAGTCCATTATCCGATATCCG 388 43 763 Antisense
TCCGATATCCGATGTTGCTCGGCTA 433 595 777 Antisense
GGAACAATTGGATGACGGCCTATTT 116 529 848 Antisense
GACGGCCTATTTGAGTATGGAACGA 72 377 861 Antisense
GCAAAGGTCGAGATGACGGCCCGAT 23 317 991 Antisense
TGACGGCCCGATTTGGAGACATTGG 140 569 1004 Antisense
AGACATTGGCATTAAATTTCCGACC 319 71 1020 Antisense
ATTTCCGACCAATGGCTCGCTAACA 262 17 1035 Antisense
GATTCAGGCAACACTTTTCGGAGAC 88 431 1092 Antisense
GACGAACGCTTGCTTGCGTTCCAGC 121 379 1114 Antisense
TTGCGTTCCAGCAAGCTCAGATTTT 378 697 1127 Antisense
Sequence Source Affymetrix Proprietary Database