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[184753_at]

Description F56F10.4 /REP_DB=WormBase Gene ID /WP=CE28466 /TR=Q20894 /GB=AAB36853.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 22      4grp_high_8_8 > 35      6grp_total > 31      4grp_total > 43      6grp_high1_sub > De      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 121.9
(-1.2)
M 		159
(3)
A 		119.8
(-1.4)
A 		106
(-3)
A 		53
B 103.1
(-3)
A 		159.9
(3)
A 		104
(-2.9)
P 		118.8
(-1.3)
P 		57
C 162.9
(1.6)
P 		185.4
(3)
P 		127.7
(-0.6)
P 		90.5
(-3)
A 		95
avr 129.3
(-0.7) 		168.1
(3) 		117.2
(-1.8) 		105.1
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 135.7
(-0.7)
A 		187.4
(3)
P 		143.4
(-0.2)
P 		144.4
(-0.1)
P 		135.3
(-0.8)
M 		104.2
(-3)
P 		83
B 140.5
(-1.1)
P 		192.1
(3)
P 		181.6
(2.2)
P 		149.2
(-0.4)
P 		116.3
(-3)
P 		139.8
(-1.1)
P 		76
C 194.8
(3)
P 		148.9
(-1.9)
P 		181
(1.5)
P 		177.6
(1.1)
P 		181.8
(1.6)
P 		139.1
(-3)
P 		56
avr 157
(0.6) 		176.1
(3) 		168.7
(2.1) 		157.1
(0.6) 		144.5
(-0.9) 		127.7
(-3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 44.4
(3)
M 		34.5
(0.9)
A 		31.3
(0.3)
A 		15.5
(-3)
A 		29
B 32.9
(0.4)
A 		39.5
(3)
A 		24.1
(-3)
P 		25.3
(-2.5)
P 		15
C 53.9
(3)
P 		53.3
(2.9)
P 		44.5
(1.5)
P 		15.3
(-3)
A 		39
avr 43.7
(3) 		42.4
(2.7) 		33.3
(0.5) 		18.7
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 25
(-3)
A 		66.7
(3)
P 		31.2
(-2.1)
P 		36.6
(-1.3)
P 		40.8
(-0.7)
M 		25.4
(-2.9)
P 		42
B 48.9
(-0.7)
P 		64
(3)
P 		44.1
(-1.9)
P 		39.5
(-3)
P 		47.3
(-1.1)
P 		52.1
(0.1)
P 		25
C 72.2
(3)
P 		45.4
(-1.4)
P 		46.1
(-1.3)
P 		35.7
(-3)
P 		58.8
(0.8)
P 		46.6
(-1.2)
P 		37
avr 48.7
(0.2) 		58.7
(3) 		40.5
(-2.1) 		37.3
(-3) 		49
(0.3) 		41.4
(-1.9) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184753_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18163
Sequence Type Exemplar sequence
Representative Public ID F56F10.4 NCBI
Target Description F56F10.4 /REP_DB=WormBase Gene ID /WP=CE28466 /TR=Q20894 /GB=AAB36853.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075768(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075768 NCBI Caenorhabditis elegans F56F10.4 (F56F10.4) mRNA, complete cds. 11/11 None
GENEFINDER00000010363 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:865076:870997:-1 11/11 None
SNAP00000010359 ENSEMBL cdna:SNAP chromosome:CEL140:X:865536:867684:-1 11/11 None
F56F10.4.1 ENSEMBL cdna:known chromosome:CEL140:X:864948:871338:-1 gene:F56F10.4 11/11 A 
F56F10.4.2 ENSEMBL cdna:known chromosome:CEL140:X:865076:871078:-1 gene:F56F10.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:865535-870997(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56F10.4
Entrez Gene 180435 Entrez gene
SwissProt Q20894 EMBL-EBI
WormBase CE28466 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB36853 Hypothetical protein F56F10.4 [Caenorhabditis elegans] ref|NP_508169.1| F56F10.4 [Caenorhabditis elegans] 0.0
blast CAE63609 Hypothetical protein CBG08100 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:184753_AT
gctgggagtgctggattgctatgctgagaattccaaaggaaccgtaacatgtctccgaat
gatgcgctttccggtgctcgacgacaaaaatgtagatgacattatagctgtggggctcca
cgaaggctctgtctacttttacgcaatcagcgaacatgatgttggactaagaatgacgtt
caaagcggaacagattaagaaactctcgattcctcacaagcaaccggttgttaatctaga
tatcacaaatgaggaaggatatttctccgcatccactcgaatcgtcgtcatcaccgagga
gcagctgcgaatctataattgtcagccgatggtgaaacgcgacagttataagatcactgc
gctggaagggctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGGGAGTGCTGGATTGCTATGCT 440 295 2229 Antisense
GAACCGTAACATGTCTCCGAATGAT 612 345 2267 Antisense
TCCGAATGATGCGCTTTCCGGTGCT 84 595 2282 Antisense
GCTTTCCGGTGCTCGACGACAAAAA 513 231 2294 Antisense
TAGCTGTGGGGCTCCACGAAGGCTC 409 649 2333 Antisense
CACGAAGGCTCTGTCTACTTTTACG 622 1 2347 Antisense
TAAGAAACTCTCGATTCCTCACAAG 601 637 2424 Antisense
AGGAAGGATATTTCTCCGCATCCAC 160 55 2480 Antisense
TCGAATCGTCGTCATCACCGAGGAG 344 599 2505 Antisense
CAGCCGATGGTGAAACGCGACAGTT 364 203 2551 Antisense
AGATCACTGCGCTGGAAGGGCTGAA 488 65 2579 Antisense
Sequence Source Affymetrix Proprietary Database