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[184752_at]

Description Y111B2A.G /REP_DB=WormBase Gene ID /WP=CE23266 /TR=Q9NEM1 /GB=CAB81959.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 32.9
(-0.3)
A 		18
(-1.8)
A 		6.8
(-3)
A 		64.9
(3)
A 		58
B 8.7
(0.8)
A 		10.1
(3)
A 		6.3
(-3)
A 		7
(-1.9)
A 		4
C 11.2
(-2)
A 		12.7
(-1.7)
A 		4.8
(-3)
A 		42.1
(3)
A 		37
avr 17.6
(-0.8) 		13.6
(-1.6) 		6
(-3) 		38
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 8
(-0.7)
A 		17.1
(3)
A 		2.3
(-3)
A 		4.1
(-2.3)
A 		5.8
(-1.6)
A 		4.4
(-2.1)
A 		15
B 5.1
(-3)
A 		11.8
(3)
A 		7.3
(-1)
A 		6.4
(-1.8)
A 		5.5
(-2.6)
A 		6.7
(-1.6)
A 		7
C 4.6
(-2.2)
A 		3.9
(-2.4)
A 		7.5
(-1.3)
A 		21.5
(3)
A 		2.1
(-3)
A 		2.6
(-2.8)
A 		19
avr 5.9
(-1.7) 		10.9
(3) 		5.7
(-1.9) 		10.7
(2.8) 		4.5
(-3) 		4.6
(-2.9) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 12
(3)
A 		3.9
(-1.8)
A 		1.8
(-3)
A 		9.5
(1.5)
A 		10
B 2.8
(3)
A 		2.5
(1.6)
A 		1.5
(-3)
A 		1.5
(-3)
A 		1
C 3.7
(-0.8)
A 		3.6
(-0.9)
A 		1.7
(-3)
A 		7.1
(3)
A 		5
avr 6.2
(3) 		3.3
(-0.9) 		1.7
(-3) 		6
(2.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.5
(-1.9)
A 		6.1
(3)
A 		0.5
(-3)
A 		1
(-2.5)
A 		1.7
(-1.7)
A 		1.1
(-2.4)
A 		6
B 1.8
(-2.7)
A 		3.9
(3)
A 		1.8
(-2.7)
A 		1.7
(-3)
A 		2.2
(-1.6)
A 		2.5
(-0.8)
A 		2
C 1.7
(-1.3)
A 		1.2
(-2.2)
A 		1.9
(-1)
A 		4.3
(3)
A 		0.7
(-3)
A 		0.9
(-2.7)
A 		4
avr 1.7
(-2.2) 		3.7
(3) 		1.4
(-3) 		2.3
(-0.7) 		1.5
(-2.7) 		1.5
(-2.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184752_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18926
Sequence Type Exemplar sequence
Representative Public ID Y111B2A.G NCBI
Target Description Y111B2A.G /REP_DB=WormBase Gene ID /WP=CE23266 /TR=Q9NEM1 /GB=CAB81959.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000006263 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12528162:12530150:1 11/11 None
SNAP00000006148 ENSEMBL cdna:SNAP chromosome:CEL140:III:12528502:12534724:1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12528157-12530146(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB76745 Hypothetical protein W03H9.4 [Caenorhabditis elegans] emb|CAB76738.1| Hypothetical protein W03H9.4 [Caenorhabditis elegans] ref|NP_496951.1| W03H9.4 [Caenorhabditis elegans] 2.0E-33
blast CAB76745 Hypothetical protein W03H9.4 [Caenorhabditis elegans] emb|CAB76738.1| Hypothetical protein W03H9.4 [Caenorhabditis elegans] ref|NP_496951.1| W03H9.4 [Caenorhabditis elegans] 4.0E-28
blast CAE73535 Hypothetical protein CBG20998 [Caenorhabditis briggsae] 2.0E-22
blast CAE73535 Hypothetical protein CBG20998 [Caenorhabditis briggsae] 9.0E-20
Sequence
Target Sequence 
>C. ELEGANS:184752_AT
tgattcttcaatttaaacgcttttacgataggaaaagattccaaaatgcacaaaaagaac
gaggagaaacgagctcggcgaatggaggaaaagacgcagatgacactctgattccgccat
cagcgttgaattatacgaatcttagtaatccattcaacgatacaacaaagctcactcaga
cgtttgtctgcggcaaaaagttggaaagtgatctgacgcagaatgatatcactaaacaaa
cgccgccgaattcaagcatataccgtgactcgcgggccgccgccaaagaagacatggaaa
tgatgaaacgtgacgcggatctccgtgccggacaaaaatatccgacagaacagaattttc
cgacgagaatccgcatacgcttcatgcaaatcagtcgacgactacgaggatctcatcgag
gacatcaaaacgtacagagaagtcgacggatgggcaaacaacgagactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATTCTTCAATTTAAACGCTTTTA 566 561 14 Antisense
GAGGAGAAACGAGCTCGGCGAATGG 145 403 74 Antisense
CGCAGATGACACTCTGATTCCGCCA 298 253 108 Antisense
GATTCCGCCATCAGCGTTGAATTAT 586 433 123 Antisense
GCTCACTCAGACGTTTGTCTGCGGC 540 301 183 Antisense
ATATCACTAAACAAACGCCGCCGAA 373 19 239 Antisense
CCGCCGAATTCAAGCATATACCGTG 595 261 256 Antisense
CAAGCATATACCGTGACTCGCGGGC 201 185 266 Antisense
TTTTCCGACGAGAATCCGCATACGC 352 677 369 Antisense
GAATCCGCATACGCTTCATGCAAAT 679 329 380 Antisense
GACGGATGGGCAAACAACGAGACTT 420 375 458 Antisense
Sequence Source Affymetrix Proprietary Database