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[184750_at]

Description Y116A8C.6 /REP_DB=WormBase Gene ID /WP=CE23317 /TR=Q9U2S9 /GB=CAB55148.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 76      4grp_high_8_8 > 05      6grp_total > 57      4grp_total > 12      6grp_high1_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 352
1 2 3 4 range
A 295.6
(0.8)
P 		231.8
(-0.7)
P 		139.1
(-3)
M 		384.4
(3)
P 		245
B 213.5
(-2.7)
P 		199.7
(-3)
P 		226.5
(-2.4)
P 		478.6
(3)
P 		279
C 182.2
(-1.9)
P 		191.2
(-1.8)
P 		127
(-3)
P 		436.2
(3)
P 		309
avr 230.4
(-1.5) 		207.6
(-2) 		164.2
(-3) 		433.1
(3) 		269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 204.4
(3)
A 		127.3
(-2)
P 		111.7
(-3)
P 		145.9
(-0.8)
P 		151.3
(-0.4)
P 		194.1
(2.3)
P 		93
B 157.9
(-0.8)
P 		207.9
(1.6)
P 		174.3
(-0)
P 		177.6
(0.1)
P 		111.9
(-3)
P 		238.1
(3)
P 		126
C 114.3
(-3)
P 		174
(-0.1)
P 		134.2
(-2)
P 		165.5
(-0.5)
A 		178.3
(0.1)
P 		238.8
(3)
P 		125
avr 158.9
(-1.7) 		169.7
(-0.9) 		140.1
(-3) 		163
(-1.4) 		147.2
(-2.5) 		223.7
(3) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 107.6
(3)
P 		50.3
(-1.8)
P 		36.4
(-3)
M 		56.3
(-1.3)
P 		71
B 68.1
(-0.9)
P 		49.3
(-3)
P 		52.5
(-2.6)
P 		102
(3)
P 		53
C 60.3
(0.3)
P 		55
(-0.8)
P 		44.3
(-3)
P 		73.6
(3)
P 		29
avr 78.7
(3) 		51.5
(-1.8) 		44.4
(-3) 		77.3
(2.8) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 37.7
(0.5)
A 		45.3
(2.5)
P 		24.3
(-3)
P 		37
(0.3)
P 		45.7
(2.6)
P 		47.3
(3)
P 		23
B 54.9
(-1.4)
P 		69.2
(0.5)
P 		42.3
(-3)
P 		47.1
(-2.4)
P 		45.4
(-2.6)
P 		88.8
(3)
P 		47
C 42.4
(-1.8)
P 		53.1
(-0.5)
P 		34.2
(-2.9)
P 		33.3
(-3)
A 		57.7
(0.1)
P 		80
(3)
P 		47
avr 45
(-1.2) 		55.9
(0.5) 		33.6
(-3) 		39.1
(-2.1) 		49.6
(-0.5) 		72
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184750_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9681
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.6 NCBI
Target Description Y116A8C.6 /REP_DB=WormBase Gene ID /WP=CE23317 /TR=Q9U2S9 /GB=CAB55148.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070607(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070607 NCBI Caenorhabditis elegans Y116A8C.6 (Y116A8C.6) mRNA, complete cds. 11/11 None
GENEFINDER00000004193 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16934300:16934671:-1 11/11 None
Y116A8C.6 ENSEMBL cdna:known chromosome:CEL140:IV:16934300:16934671:-1 gene:Y116A8C.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004078 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16934305-16934677(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8C.6
Entrez Gene 190994 Entrez gene
SwissProt Q9U2S9 EMBL-EBI
WormBase CE23317 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55148 Hypothetical protein Y116A8C.6 [Caenorhabditis elegans] ref|NP_503008.1| Y116A8C.6 [Caenorhabditis elegans] 2.0E-35
blast CAE57384 Hypothetical protein CBG00332 [Caenorhabditis briggsae] 1.0E-11
Sequence
Target Sequence 
>C. ELEGANS:184750_AT
ccacggccagctttttgcagcgtggtcgtggaggagtaccgccacagcaaactgcacatc
gactcgctcaaaataatcctccgaggctctgccaactccatcaccctctccagattcttc
gactcttgcctcgaccgtacccgccgaacttctctcaactcgtcctcgtcgtcattcttc
acaaaacctcgctcaatgactccgaaccttcccggagcctcagcatcggcggcagcggcg
gcggcaaacgtcacgaatcggacgatgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACGGCCAGCTTTTTGCAGCGTGG 113 275 31 Antisense
GCTTTTTGCAGCGTGGTCGTGGAGG 37 305 40 Antisense
GTCGTGGAGGAGTACCGCCACAGCA 394 473 55 Antisense
GCCACAGCAAACTGCACATCGACTC 247 279 71 Antisense
ACTGCACATCGACTCGCTCAAAATA 561 97 81 Antisense
ATCGACTCGCTCAAAATAATCCTCC 297 37 88 Antisense
AAAATAATCCTCCGAGGCTCTGCCA 275 131 100 Antisense
TTCTTCACAAAACCTCGCTCAATGA 51 691 205 Antisense
TTCACAAAACCTCGCTCAATGACTC 3 685 208 Antisense
CGGCGGCAAACGTCACGAATCGGAC 347 241 269 Antisense
AAACGTCACGAATCGGACGATGAGC 686 121 276 Antisense
Sequence Source Affymetrix Proprietary Database