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[184749_at]

Description F35F11.2 /REP_DB=WormBase Gene ID /WP=CE24943 /TR=Q9N5U6 /GB=AAF39794.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 43      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.9
(-3)
A 		4.1
(3)
A 		3.5
(1.9)
A 		2.1
(-0.8)
A 		3
B 1.3
(-2.9)
A 		9.5
(3)
A 		1.4
(-2.9)
A 		1.2
(-3)
A 		8
C 4
(3)
A 		2.2
(-0.4)
A 		0.8
(-3)
A 		1.4
(-1.9)
A 		3
avr 2.1
(-2.2) 		5.3
(3) 		1.9
(-2.5) 		1.6
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 2.6
(-2.5)
A 		1.8
(-2.8)
A 		1.4
(-3)
A 		3
(-2.3)
A 		3.8
(-2)
A 		15.8
(3)
A 		14
B 1.4
(-2.9)
A 		0.9
(-3)
A 		1.6
(-2.9)
A 		1.5
(-2.9)
A 		29.5
(3)
A 		10.2
(-1)
A 		29
C 4.6
(-2.2)
A 		1.2
(-3)
A 		1.5
(-2.9)
A 		1.4
(-3)
A 		28.3
(3)
A 		20.5
(1.3)
A 		27
avr 2.9
(-2.5) 		1.3
(-3) 		1.5
(-2.9) 		2
(-2.8) 		20.5
(3) 		15.5
(1.4) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.3
(-3)
A 		0.9
(3)
A 		0.9
(3)
A 		0.3
(-3)
A 		1
B 0.4
(-2.7)
A 		2.3
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		2
C 1.3
(3)
A 		0.6
(-0.8)
A 		0.3
(-2.5)
A 		0.2
(-3)
A 		1
avr 0.7
(-0.6) 		1.3
(3) 		0.5
(-1.8) 		0.3
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.5
(-2.7)
A 		0.6
(-2.5)
A 		0.3
(-3)
A 		0.8
(-2.2)
A 		1.2
(-1.5)
A 		3.9
(3)
A 		4
B 0.5
(-2.9)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		0.4
(-2.9)
A 		12
(3)
A 		3.8
(-1.2)
A 		12
C 1.7
(-2.1)
A 		0.4
(-2.9)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		9.2
(3)
A 		6.9
(1.4)
A 		9
avr 0.9
(-2.6) 		0.4
(-3) 		0.4
(-3) 		0.5
(-2.9) 		7.5
(3) 		4.9
(0.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184749_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11136
Sequence Type Exemplar sequence
Representative Public ID F35F11.2 NCBI
Target Description F35F11.2 /REP_DB=WormBase Gene ID /WP=CE24943 /TR=Q9N5U6 /GB=AAF39794.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068063(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068063 NCBI Caenorhabditis elegans F35F11.2 (F35F11.2) mRNA, complete cds. 11/11 None
F35F11.2 ENSEMBL cdna:known chromosome:CEL140:IV:4040344:4041105:1 gene:F35F11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034668 8/11 Cross Hyb Matching Probes None
GENEFINDER00000034672 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4040583-4041111(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35F11.2
Entrez Gene 177159 Entrez gene
SwissProt Q9N5U6 EMBL-EBI
WormBase CE24943 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39794 Hypothetical protein F35F11.2 [Caenorhabditis elegans] ref|NP_500464.1| F35F11.2 [Caenorhabditis elegans] 1.0E-69
blast CAE73894 Hypothetical protein CBG21494 [Caenorhabditis briggsae] 9.0E-21
Sequence
Target Sequence 
>C. ELEGANS:184749_AT
gaaactgtcgattatgagtattcggtggaagaggatcacgaggacgatgagtacaagtcg
acgaaaaatgaaacgatcaaaaagttcttgatcgatcggaagcagttggagaaggcgttg
cgattagccgctgaaaacgagaaaaagctgaaatcgatgctcgacgagtcgggaaaatgg
ttcgatcgttacgagaaaatgatcgatgatcttgatgagcaactgaccacgtataatacc
aatcgcaaaatcgttctggataatattatcaacggtgtaagttattggggtggcggtgcg
gtcgtgccgcggttttggtctgaaaatcgatatttgatccgttgcggtcgcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTGTCGATTATGAGTATTCGG 507 357 16 Antisense
AGTTCTTGATCGATCGGAAGCAGTT 518 63 98 Antisense
GAAGGCGTTGCGATTAGCCGCTGAA 577 333 126 Antisense
GAAATCGATGCTCGACGAGTCGGGA 3 363 165 Antisense
GAGTCGGGAAAATGGTTCGATCGTT 541 383 181 Antisense
GATCTTGATGAGCAACTGACCACGT 592 419 223 Antisense
GAGCAACTGACCACGTATAATACCA 251 383 232 Antisense
TACCAATCGCAAAATCGTTCTGGAT 655 649 252 Antisense
TAAGTTATTGGGGTGGCGGTGCGGT 275 155 293 Antisense
TGCCGCGGTTTTGGTCTGAAAATCG 308 585 320 Antisense
GATATTTGATCCGTTGCGGTCGCGC 672 425 344 Antisense
Sequence Source Affymetrix Proprietary Database