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[184748_at] 7TM chemoreceptor, srw family

Description H27D07.3 /REP_DB=WormBase Gene ID /WP=CE17982 /TR=O61909 /GB=AAG24155.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 0      6grp_cgc > 85      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 9.8
(-3)
A 		29.8
(-1.2)
A 		29.8
(-1.2)
A 		77.6
(3)
P 		68
B 29.9
(0.2)
A 		19.2
(-3)
A 		32.2
(0.9)
A 		39.4
(3)
P 		20
C 28.6
(-0.3)
A 		14.3
(-3)
A 		19.9
(-2)
A 		46.3
(3)
P 		32
avr 22.8
(-2.7) 		21.1
(-3) 		27.3
(-1.9) 		54.4
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 22.4
(-1)
A 		15.1
(-2.1)
A 		46.9
(3)
P 		35.3
(1.1)
P 		28.2
(-0)
A 		9.7
(-3)
A 		37
B 13.4
(-1.7)
A 		4.2
(-3)
A 		22.4
(-0.3)
A 		45.4
(3)
P 		39.6
(2.2)
P 		7.3
(-2.5)
A 		41
C 6.3
(-2.3)
A 		35.4
(2.1)
A 		5.2
(-2.5)
A 		41.7
(3)
A 		27
(0.8)
A 		1.8
(-3)
A 		40
avr 14
(-1.7) 		18.2
(-0.9) 		24.8
(0.2) 		40.8
(3) 		31.6
(1.4) 		6.3
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.6
(-3)
A 		6.5
(-0.8)
A 		7.8
(0.2)
A 		11.4
(3)
P 		8
B 9.5
(3)
A 		4.7
(-3)
A 		7.5
(0.5)
A 		8.4
(1.6)
P 		5
C 9.5
(3)
A 		4.1
(-3)
A 		6.9
(0.1)
A 		7.8
(1.1)
P 		5
avr 7.5
(0.5) 		5.1
(-3) 		7.4
(0.4) 		9.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 4.1
(-1.7)
A 		5.4
(-0.7)
A 		10.2
(3)
P 		9
(2.1)
P 		8.5
(1.7)
A 		2.4
(-3)
A 		8
B 4.6
(-1.7)
A 		1.4
(-3)
A 		5.4
(-1.4)
A 		12
(1.3)
P 		16.1
(3)
P 		2.7
(-2.5)
A 		15
C 2.3
(-2)
A 		10.8
(3)
A 		1.3
(-2.6)
A 		8.4
(1.6)
A 		8.7
(1.8)
A 		0.6
(-3)
A 		10
avr 3.7
(-1.8) 		5.9
(-0.4) 		5.6
(-0.6) 		9.8
(2.2) 		11.1
(3) 		1.9
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184748_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15727
Sequence Type Exemplar sequence
Representative Public ID H27D07.3 NCBI
Target Description H27D07.3 /REP_DB=WormBase Gene ID /WP=CE17982 /TR=O61909 /GB=AAG24155.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071397(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071397 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-143) (srw-143) mRNA, complete cds. 10/11 A 
H27D07.3 ENSEMBL cdna:known chromosome:CEL140:V:2939430:2941332:-1 gene:H27D07.3 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000017836 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2939559-2941332(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-143
Ensembl H27D07.3
Entrez Gene 186788 Entrez gene
SwissProt O61909 EMBL-EBI
WormBase CE34572 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24155 Serpentine receptor, class w protein 143 [Caenorhabditis elegans] ref|NP_503798.2| Serpentine Receptor, class W family member (srw-143) [Caenorhabditis elegans] 0.0
blast AAC17764 Serpentine receptor, class w protein 144 [Caenorhabditis elegans] ref|NP_503805.2| Serpentine Receptor, class W family member (srw-144) [Caenorhabditis elegans] 1.0E-170
blast AAG24154 Serpentine receptor, class w protein 141 [Caenorhabditis elegans] ref|NP_503797.1| Serpentine Receptor, class W family member (srw-141) [Caenorhabditis elegans] 1.0E-123
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503798.2 6 36-58,68-85,160-182,222-244,273-295,310-332
H27D07.3 6 36-58,68-85,160-182,222-244,273-295,310-332
Sequence
Target Sequence 
>C. ELEGANS:184748_AT
aaatacgaaagacttgcacacccaccaacatcattatttacaatgatttgtataaatttg
atcttcggcccaatttcaatagccacctttttcgggtctgatataacgtcacaaaaccac
acatcttcgtgtgatccggatggagtacttttttattatctggacatatctgcgtcttac
aaacagaatgatggcatgattctgaaaatatatactttaatcaattcagtggtctctacg
ataataccttgtttcatctttccaattgtgactgtatttcttgtgaaagaactttggaaa
gccgaagcgaatagaaaacgattattctcttcaaaaaaagtgaacgactcctcgaaaaac
actcaactggttttattcttgacgtgcgtgttcttcatcgcccaatttcccattggaatt
tccatcggtgcttcttactttttttcagaaactcccggattcatattttatcatttccag
gataattttgcacgaaatttcgtatatattcagtgtaattctggtggccaataccttttc
acacttttttatatgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATACGAAAGACTTGCACACCCAC 671 115 460 Antisense
GTATAAATTTGATCTTCGGCCCAAT 599 453 509 Antisense
CTTCGGCCCAATTTCAATAGCCACC 28 219 522 Antisense
TAGCCACCTTTTTCGGGTCTGATAT 273 651 539 Antisense
ATAACGTCACAAAACCACACATCTT 572 25 562 Antisense
AAACCACACATCTTCGTGTGATCCG 485 125 573 Antisense
ATCTGGACATATCTGCGTCTTACAA 57 35 617 Antisense
TCAATTCAGTGGTCTCTACGATAAT 242 627 680 Antisense
AAACTCCCGGATTCATATTTTATCA 347 127 908 Antisense
TCTGGTGGCCAATACCTTTTCACAC 231 607 979 Antisense
ACCTTTTCACACTTTTTTATATGCA 561 85 992 Antisense
Sequence Source Affymetrix Proprietary Database