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[184747_at]

Description ZK1127.8 /REP_DB=WormBase Gene ID /WP=CE07646 /TR=Q23397 /GB=AAB93430.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 4
(-3)
A 		41.5
(3)
A 		4.2
(-3)
A 		25.8
(0.5)
A 		38
B 4.1
(-2.9)
A 		31.7
(3)
M 		8
(-2)
A 		3.5
(-3)
A 		28
C 10.1
(-0.8)
A 		14.4
(0.6)
A 		2.9
(-3)
A 		22.1
(3)
A 		19
avr 6.1
(-2.7) 		29.2
(3) 		5
(-3) 		17.1
(0) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 3.6
(-0.1)
A 		5.6
(2.4)
A 		2
(-2)
A 		6.1
(3)
A 		1.6
(-2.5)
A 		1.2
(-3)
A 		5
B 1.6
(-2.9)
A 		10.1
(-0.1)
A 		6.1
(-1.4)
A 		19.4
(3)
A 		1.4
(-3)
A 		1.9
(-2.8)
A 		18
C 2.3
(-2.9)
A 		5
(-2.5)
A 		6.7
(-2.2)
A 		39.2
(3)
A 		1.8
(-3)
A 		1.8
(-3)
A 		37
avr 2.5
(-2.7) 		6.9
(-1.4) 		4.9
(-2) 		21.6
(3) 		1.6
(-3) 		1.6
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.5
(-2.7)
A 		9
(3)
A 		1.1
(-3)
A 		3.8
(-0.9)
A 		8
B 1.3
(-2.5)
A 		7.8
(3)
M 		1.9
(-2)
A 		0.7
(-3)
A 		7
C 3.3
(1.5)
A 		4.1
(3)
A 		1
(-3)
A 		3.7
(2.2)
A 		3
avr 2
(-2.3) 		7
(3) 		1.3
(-3) 		2.7
(-1.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.7
(-1.6)
A 		2
(3)
A 		0.4
(-2.6)
A 		1.5
(1.2)
A 		0.5
(-2.3)
A 		0.3
(-3)
A 		2
B 0.5
(-3)
A 		3.4
(0.8)
A 		1.5
(-1.7)
A 		5.1
(3)
A 		0.6
(-2.9)
A 		0.7
(-2.7)
A 		5
C 0.9
(-2.8)
A 		1.5
(-2.3)
A 		1.7
(-2.1)
A 		7.9
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		7
avr 0.7
(-2.7) 		2.3
(-0.5) 		1.2
(-2) 		4.8
(3) 		0.6
(-2.9) 		0.5
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184747_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4254
Sequence Type Exemplar sequence
Representative Public ID ZK1127.8 NCBI
Target Description ZK1127.8 /REP_DB=WormBase Gene ID /WP=CE07646 /TR=Q23397 /GB=AAB93430.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) ZK1127.8
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK1127.8 ZK1127.8 /REP_DB=WormBase Gene ID /WP=CE07646 /TR=Q23397 /GB=AAB93430.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064135 9/11 Negative Strand Matching Probes A 
NM_063039 11/11 Negative Strand Matching Probes A 
GENEFINDER00000000332 9/11 Negative Strand Matching Probes None
SNAP00000033586 11/11 Negative Strand Matching Probes None
GENEFINDER00000033599 11/11 Negative Strand Matching Probes None
ZK1127.7 11/11 Negative Strand Matching Probes A 
K12D12.1 9/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7039906-7040808(-) 100.0 100.0
chrII:11878318-11879197(-) 94.04 94.04
Sequence
Target Sequence 
>C. ELEGANS:184747_AT
cttccacttcttcactggatcagcatcgaacttcatcttgatcaaaacatcgacaatcgc
cgtcttcttcttgttctcgagaacaatcttgttgttgatcgtggcgaggataaaacgagc
ctggttagtgagacgcttgctctgagcctgaagaactccgaggaggtactcctttctctg
tacgtacttctcttggcggctatcgtagaactcttgagtaatcgcttctggcgaagtgta
tgtacgaagccatccggcagcatcgaaaagtaccatgcacgtagtgttgatgacagcttg
gagcttgaagacttgatgaagatcctgaccgcgctccaattcacgaagttttcccggcga
gagcttcacgacgaacttaacagtagtatctgtgtgatactctttgtagtcgacaataac
aggcgatttcttgtccgagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCCACTTCTTCACTGGATCAGCA 60 219 187 Antisense
GGATCAGCATCGAACTTCATCTTGA 564 511 203 Antisense
AAAACATCGACAATCGCCGTCTTCT 288 131 230 Antisense
TTAGTGAGACGCTTGCTCTGAGCCT 312 681 311 Antisense
CGAGGAGGTACTCCTTTCTCTGTAC 217 249 345 Antisense
TCTCTTGGCGGCTATCGTAGAACTC 146 611 375 Antisense
AACTCTTGAGTAATCGCTTCTGGCG 443 141 395 Antisense
ATGTACGAAGCCATCCGGCAGCATC 288 47 426 Antisense
GACTTGATGAAGATCCTGACCGCGC 701 369 496 Antisense
GCGCTCCAATTCACGAAGTTTTCCC 237 287 517 Antisense
TAACAGGCGATTTCTTGTCCGAGCT 416 639 603 Antisense
Sequence Source Affymetrix Proprietary Database