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[184746_at]

Description F52F10.2 /REP_DB=WormBase Gene ID /WP=CE19882 /TR=Q9UAR0 /GB=AAC69232.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 43      6grp_highest_nonorm > 71      6grp_total > 20      4grp_total > 57      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 818
1 2 3 4 range
A 97.4
(-2.4)
A 		821
(3)
P 		627.4
(1.5)
P 		20.3
(-3)
A 		801
B 94.1
(-2.2)
P 		611.7
(2.4)
P 		683.7
(3)
P 		3.5
(-3)
A 		680
C 63.3
(-2.8)
A 		602.6
(2.5)
P 		653.8
(3)
P 		46.7
(-3)
A 		607
avr 84.9
(-2.4) 		678.4
(3) 		655
(2.8) 		23.5
(-3) 		655

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 489
1 2 3 4 5 6 range
A 142.5
(-3)
P 		631.5
(3)
P 		319.1
(-0.8)
P 		364.8
(-0.3)
P 		359.5
(-0.3)
P 		247.8
(-1.7)
P 		489
B 172.9
(-3)
P 		549.2
(3)
P 		433.3
(1.2)
P 		322.1
(-0.6)
P 		292.4
(-1.1)
P 		180.1
(-2.9)
P 		376
C 192.9
(-3)
P 		429
(1.9)
P 		421.1
(1.8)
P 		481.1
(3)
P 		287.9
(-1)
P 		190.8
(-3)
P 		290
avr 169.4
(-3) 		536.6
(3) 		391.2
(0.6) 		389.3
(0.6) 		313.3
(-0.6) 		206.2
(-2.4) 		367
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 35.5
(-1.9)
A 		178.2
(3)
P 		164
(2.5)
P 		3
(-3)
A 		175
B 30
(-1.9)
P 		151.1
(2.7)
P 		158.4
(3)
P 		0.7
(-3)
A 		158
C 21
(-2.6)
A 		173.3
(1.5)
P 		227.9
(3)
P 		7.9
(-3)
A 		220
avr 28.8
(-2.2) 		167.5
(2.5) 		183.4
(3) 		3.9
(-3) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 26.3
(-3)
P 		224.6
(3)
P 		69.5
(-1.7)
P 		92.5
(-1)
P 		108.5
(-0.5)
P 		60.3
(-2)
P 		198
B 60.2
(-3)
P 		182.8
(3)
P 		105.2
(-0.8)
P 		85.3
(-1.8)
P 		118.8
(-0.1)
P 		67.2
(-2.7)
P 		123
C 71.5
(-2.3)
P 		130.9
(3)
P 		107.2
(0.9)
P 		96.7
(-0.1)
P 		93.2
(-0.4)
P 		63.9
(-3)
P 		67
avr 52.7
(-3) 		179.4
(3) 		94
(-1) 		91.5
(-1.2) 		106.8
(-0.4) 		63.8
(-2.5) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184746_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14819
Sequence Type Exemplar sequence
Representative Public ID F52F10.2 NCBI
Target Description F52F10.2 /REP_DB=WormBase Gene ID /WP=CE19882 /TR=Q9UAR0 /GB=AAC69232.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071042(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071042 NCBI Caenorhabditis elegans F52F10.2 (F52F10.2) mRNA, complete cds. 11/11 None
SNAP00000019921 ENSEMBL cdna:SNAP chromosome:CEL140:V:1548095:1552156:1 9/11 None
GENEFINDER00000019925 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1548095:1550293:1 11/11 None
F52F10.2 ENSEMBL cdna:known chromosome:CEL140:V:1547972:1550530:1 gene:F52F10.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1548094-1550134(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52F10.2
Entrez Gene 178644 Entrez gene
SwissProt Q9UAR0 EMBL-EBI
WormBase CE29388 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69232 Hypothetical protein F52F10.2 [Caenorhabditis elegans] ref|NP_503443.1| F52F10.2 [Caenorhabditis elegans] 0.0
blast CAE62487 Hypothetical protein CBG06591 [Caenorhabditis briggsae] 0.0
blast CAA91359 Hypothetical protein W03C9.6 [Caenorhabditis elegans] ref|NP_496546.2| W03C9.6 [Caenorhabditis elegans] 1.0E-114
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503443.1 12 53-75,90-112,125-147,151-173,186-208,228-250,286-308,328-347,360-379,413-435,455-477,482-501
F52F10.2 12 53-75,90-112,125-147,151-173,186-208,228-250,286-308,328-347,360-379,413-435,455-477,482-501
SNAP00000019921 10 53-75,90-112,125-147,151-173,186-208,228-250,286-308,328-347,360-379,413-435
GENEFINDER00000019925 12 53-75,90-112,125-147,151-173,186-208,228-250,286-308,328-347,360-379,413-435,455-477,482-501
Sequence
Target Sequence 
>C. ELEGANS:184746_AT
aagactatgaccgcaagatccatcggaacacttctaccgattctcatgatggtccaatac
ggatggactggaatcgagaccgtcagaatcacctccttcctgatgggcggttcaggactt
ctgtcaatgtttgtaattggaagcttcatgttttgcaagctcggaaccatagttcaacca
cgcttcatttacctgttctctatctcgctgttcacgatgctctacattgtgacctacccg
tataaatctattggagtggaagttgcaatgtacaacgccacagataataccggttgtgat
ccggacaagtactcgtggtgtgagggaggaattgctccacaaccaatcttgttcctatgt
tgtatggtatttgtattcggaatgaccatgccatcatcagctatttctctggatacaatt
tactcaaagattttgggaaatatagaccagagcgtcatgcaaggagctgctgttatcttg
gacgacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACTATGACCGCAAGATCCATCG 111 153 907 Antisense
AACACTTCTACCGATTCTCATGATG 682 135 933 Antisense
AATCGAGACCGTCAGAATCACCTCC 311 169 978 Antisense
CCTCCTTCCTGATGGGCGGTTCAGG 668 265 998 Antisense
GGCGGTTCAGGACTTCTGTCAATGT 378 541 1012 Antisense
CGGAACCATAGTTCAACCACGCTTC 241 241 1068 Antisense
ACGATGCTCTACATTGTGACCTACC 505 93 1120 Antisense
CTCCACAACCAATCTTGTTCCTATG 351 233 1241 Antisense
GACCATGCCATCATCAGCTATTTCT 525 383 1290 Antisense
AGAGCGTCATGCAAGGAGCTGCTGT 257 69 1355 Antisense
GAGCTGCTGTTATCTTGGACGACAT 205 387 1370 Antisense
Sequence Source Affymetrix Proprietary Database