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[184743_at]

Description C14A11.2 /REP_DB=WormBase Gene ID /WP=CE08150 /TR=O02135 /GB=AAB52869.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 22      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 72
(1.1)
P 		47.3
(-1)
A 		23.4
(-3)
A 		95.4
(3)
A 		72
B 93.8
(3)
P 		37.4
(-1)
A 		9.2
(-3)
A 		88
(2.6)
A 		85
C 70
(2.1)
P 		13
(-2.5)
A 		6.9
(-3)
A 		80.9
(3)
P 		74
avr 78.6
(2.2) 		32.6
(-1.4) 		13.2
(-3) 		88.1
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 92.6
(3)
P 		19
(-2)
A 		48.9
(0)
A 		56.3
(0.5)
A 		9.5
(-2.7)
A 		4.8
(-3)
A 		88
B 103.9
(3)
P 		24.7
(-1.7)
A 		44.8
(-0.5)
A 		14.7
(-2.3)
A 		8.8
(-2.6)
A 		2.7
(-3)
A 		101
C 62.9
(1.7)
A 		78.9
(3)
A 		8.1
(-2.9)
A 		14.9
(-2.4)
A 		10.4
(-2.7)
A 		7.3
(-3)
A 		72
avr 86.5
(3) 		40.9
(-0.4) 		33.9
(-0.9) 		28.6
(-1.3) 		9.6
(-2.7) 		4.9
(-3) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 26.2
(3)
P 		10.3
(-1.7)
A 		6.1
(-3)
A 		14
(-0.6)
A 		20
B 29.9
(3)
P 		9.2
(-1.5)
A 		2.1
(-3)
A 		18.8
(0.6)
A 		28
C 23.2
(3)
P 		3.7
(-2.6)
A 		2.4
(-3)
A 		13.6
(0.2)
P 		21
avr 26.4
(3) 		7.7
(-1.9) 		3.5
(-3) 		15.5
(0.1) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 17.1
(3)
P 		6.7
(-0.9)
A 		10.7
(0.6)
A 		14.3
(1.9)
A 		2.9
(-2.4)
A 		1.2
(-3)
A 		16
B 36.2
(3)
P 		8.2
(-1.8)
A 		10.9
(-1.3)
A 		3.9
(-2.5)
A 		3.6
(-2.6)
A 		1
(-3)
A 		35
C 23.3
(2.8)
A 		24.1
(3)
A 		2.1
(-3)
A 		3
(-2.8)
A 		3.4
(-2.6)
A 		2.4
(-2.9)
A 		22
avr 25.5
(3) 		13
(-0.1) 		7.9
(-1.4) 		7.1
(-1.6) 		3.3
(-2.6) 		1.5
(-3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184743_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18616
Sequence Type Exemplar sequence
Representative Public ID C14A11.2 NCBI
Target Description C14A11.2 /REP_DB=WormBase Gene ID /WP=CE08150 /TR=O02135 /GB=AAB52869.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076086(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076086 NCBI Caenorhabditis elegans C14A11.2 (C14A11.2) mRNA, complete cds. 11/11 None
C14A11.2 ENSEMBL cdna:known chromosome:CEL140:X:2801541:2804714:1 gene:C14A11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000039995 8/11 Cross Hyb Matching Probes None
SNAP00000039981 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2803211-2804714(+) 87.32 87.32
Public Domain and Genome References
Gene Title
Ensembl C14A11.2
Entrez Gene 182590 Entrez gene
SwissProt O02135 EMBL-EBI
WormBase CE08150 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52869 Hypothetical protein C14A11.2 [Caenorhabditis elegans] ref|NP_508487.1| C14A11.2 [Caenorhabditis elegans] 1.0E-165
blast CAE58833 Hypothetical protein CBG02045 [Caenorhabditis briggsae] 8.0E-54
Sequence
Target Sequence 
>C. ELEGANS:184743_AT
acctaccgcactttaatcaccaggacttgaacgtccgattggatatgcttggcactgaaa
agcatttagataaacaggaaattggctatcgccagcaatttcttcttcagaacatgtcgg
ttgacgatgacaatgagcctaggaaattattcactttgtacgacataaaagatgacgaaa
catcaaaaagtgctttagaagtgagtcacgtgaaaacatgcaatactaatacagcaaaac
gccggctacgatttaccaatgttcatgccctaatttgcccacaagaaaaaatgttcctga
ccactgcttgcgactactttcttgcaatttatgacgagctgatagattatgttgaagcaa
ttggagagttgagaaataagcaaataattgtcgagcacttctactacaagttgtttatgc
acactttgaaaatgttctactatactgacaaaggatggaggttcaatttggagtttgatg
agtttttcagcggatacctgcggaaatacagagaacctattatcaaccagatgacgcgaa
actggaataatgcaaagaaagctgcccgtgaagctgcagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTACCGCACTTTAATCACCAGGA 683 87 305 Antisense
ATCACCAGGACTTGAACGTCCGATT 408 23 320 Antisense
GTCCGATTGGATATGCTTGGCACTG 247 477 337 Antisense
TATCGCCAGCAATTTCTTCTTCAGA 350 659 391 Antisense
AACGCCGGCTACGATTTACCAATGT 305 141 542 Antisense
ACCAATGTTCATGCCCTAATTTGCC 82 83 559 Antisense
GAAAAAATGTTCCTGACCACTGCTT 124 355 589 Antisense
ACTGCTTGCGACTACTTTCTTGCAA 661 97 607 Antisense
AATAATTGTCGAGCACTTCTACTAC 667 171 687 Antisense
GAGTTTTTCAGCGGATACCTGCGGA 59 397 784 Antisense
GAAAGCTGCCCGTGAAGCTGCAGCA 678 359 861 Antisense
Sequence Source Affymetrix Proprietary Database