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[184742_at]

Description F19G12.2 /REP_DB=WormBase Gene ID /WP=CE07085 /TR=Q19599 /GB=AAG24065.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 6.5
(-3)
A 		33.8
(2.7)
A 		35.3
(3)
A 		9.7
(-2.3)
A 		29
B 39.1
(3)
A 		10.9
(-3)
A 		29.5
(1)
A 		32.5
(1.6)
A 		28
C 13.4
(-2.1)
A 		5.8
(-3)
A 		20
(-1.3)
A 		55.2
(3)
A 		49
avr 19.7
(-1.9) 		16.8
(-3) 		28.3
(1.4) 		32.5
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 26.6
(2.7)
A 		3.8
(-3)
A 		27.6
(3)
A 		4.5
(-2.8)
A 		7.9
(-2)
A 		6.3
(-2.4)
A 		24
B 8.2
(-0.6)
A 		5.4
(-2.1)
A 		3.7
(-3)
A 		8.1
(-0.7)
A 		15
(3)
A 		5.7
(-1.9)
A 		11
C 28.6
(1.3)
A 		37.4
(3)
A 		8
(-2.5)
A 		8
(-2.5)
A 		5.9
(-2.9)
A 		5.5
(-3)
A 		32
avr 21.1
(3) 		15.5
(0.8) 		13.1
(-0.1) 		6.9
(-2.6) 		9.6
(-1.5) 		5.8
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.4
(-2.2)
A 		7.3
(1.5)
A 		9.2
(3)
A 		1.4
(-3)
A 		8
B 12.5
(3)
A 		2.7
(-3)
A 		6.8
(-0.5)
A 		6.9
(-0.4)
A 		10
C 4.4
(-0.9)
A 		1.7
(-3)
A 		7
(1.2)
A 		9.3
(3)
A 		8
avr 6.4
(0.9) 		3.9
(-3) 		7.7
(3) 		5.9
(0.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 4.9
(1.7)
A 		1.4
(-2.6)
A 		6
(3)
A 		1.1
(-3)
A 		2.4
(-1.4)
A 		1.5
(-2.5)
A 		5
B 2.9
(-0.7)
A 		1.8
(-2)
A 		0.9
(-3)
A 		2.2
(-1.5)
A 		6.1
(3)
A 		2.1
(-1.6)
A 		5
C 10.6
(2.5)
A 		11.4
(3)
A 		2
(-2.8)
A 		1.6
(-3)
A 		1.9
(-2.8)
A 		1.9
(-2.8)
A 		10
avr 6.1
(3) 		4.9
(1.4) 		3
(-1.1) 		1.6
(-3) 		3.5
(-0.5) 		1.8
(-2.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184742_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18548
Sequence Type Exemplar sequence
Representative Public ID F19G12.2 NCBI
Target Description F19G12.2 /REP_DB=WormBase Gene ID /WP=CE07085 /TR=Q19599 /GB=AAG24065.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075868(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075868 NCBI Caenorhabditis elegans F19G12.2 (F19G12.2) mRNA, complete cds. 11/11 A 
GENEFINDER00000018688 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1429497:1430866:1 10/11 None
F19G12.2 ENSEMBL cdna:known chromosome:CEL140:X:1427769:1430866:1 gene:F19G12.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6250235-6253154(+) 83.66 83.66
chrX:1427768-1430866(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19G12.2
Entrez Gene 184692 Entrez gene
SwissProt Q19599 EMBL-EBI
WormBase CE07085 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9186 deoxyribonucleoside diphosphate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4748 ribonucleoside-diphosphate reductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24065 Hypothetical protein F19G12.2 [Caenorhabditis elegans] ref|NP_508269.1| F19G12.2 [Caenorhabditis elegans] 0.0
blast AAK84536 Hypothetical protein F54H12.2 [Caenorhabditis elegans] ref|NP_498735.1| F54H12.2 [Caenorhabditis elegans] sp|P34456|YMD2_CAEEL Hypothetical protein F54H12.2 in chromosome III 0.0
blast AAC48087 Hypothetical protein F58F9.1 [Caenorhabditis elegans] ref|NP_500944.1| F58F9.1 [Caenorhabditis elegans] 1.0E-177
blast AAG24065 Hypothetical protein F19G12.2 [Caenorhabditis elegans] ref|NP_508269.1| F19G12.2 [Caenorhabditis elegans] 1.0E-104
blast CAA84688 Hypothetical protein C03C10.3 [Caenorhabditis elegans] ref|NP_497821.1| RiboNucleotide Reductase family member (rnr-2) [Caenorhabditis elegans] sp|P42170|RIR2_CAEEL Ribonucleoside-diphosphate reductase small chain (Ribonucleotide reductase small subunit) 5.0E-82
blast CAE72892 Hypothetical protein CBG20205 [Caenorhabditis briggsae] 4.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR000358 EMBL-EBI Ribonucleotide reductase 8.8E-45
Pfam IPR000358 EMBL-EBI Ribonucleotide reductase 2.1E-22
Pfam IPR000358 EMBL-EBI Ribonucleotide reductase 1.1E-82
Sequence
Target Sequence 
>C. ELEGANS:184742_AT
cgacgccgagcgcaatattttattcaacgcaataacaacttttaaatttatcaaggcaaa
agccgattggtgtcttcgatggatttctgatcacaatgccccgttttccgagcgcttggc
cgcctttgctgctgttgaaggaatatttttcagttcttcgtttgctgcaattttttggct
gaaaaagcgcggtttgctccccgggctgactcattcaaacgagctgatctcaatgttttt
gcttcacccaaattgctttttctcaactttcaatttacagagacgaaggaaacccgcaga
gtcgcgcatcacagaaattatcaacgagtccgtgttggttgaacaagattttgttcgaga
atccctgcccacaaacttgattggaatgaatcagcacatgatgtgtaaatatgttgaatt
tgtcgctgatcttctgcttgaagagttgggttactccaaacgctacaacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACGCCGAGCGCAATATTTTATTC 289 251 1407 Antisense
GATTGGTGTCTTCGATGGATTTCTG 527 435 1471 Antisense
AATATTTTTCAGTTCTTCGTTTGCT 228 173 1548 Antisense
GCTGAAAAAGCGCGGTTTGCTCCCC 194 295 1584 Antisense
CCCGGGCTGACTCATTCAAACGAGC 644 231 1606 Antisense
TGCTTCACCCAAATTGCTTTTTCTC 604 579 1646 Antisense
GCAGAGTCGCGCATCACAGAAATTA 255 311 1702 Antisense
AGATTTTGTTCGAGAATCCCTGCCC 67 65 1752 Antisense
ATCCCTGCCCACAAACTTGATTGGA 610 37 1767 Antisense
ATTTGTCGCTGATCTTCTGCTTGAA 106 19 1824 Antisense
TGGGTTACTCCAAACGCTACAACAC 701 551 1853 Antisense
Sequence Source Affymetrix Proprietary Database