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[184741_at]

Description Y105E8A.B /REP_DB=WormBase Gene ID /WP=CE24088 /TR=Q9NF23 /GB=CAB60842.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 135.9
(3)
A 		18.7
(-3)
A 		33.5
(-2.2)
A 		22
(-2.8)
A 		117
B 53.5
(3)
A 		21.1
(-1.6)
A 		40.4
(1.1)
A 		11.5
(-3)
A 		42
C 32.3
(-1.6)
A 		66.1
(0.4)
A 		7.9
(-3)
A 		112.1
(3)
A 		104
avr 73.9
(3) 		35.3
(-2) 		27.3
(-3) 		48.5
(-0.3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 96
(3)
A 		60.7
(0.3)
A 		16.6
(-3)
A 		16.8
(-3)
A 		48.9
(-0.6)
A 		33.4
(-1.7)
A 		79
B 42.2
(1.1)
A 		57.6
(3)
A 		14.8
(-2.4)
A 		38.5
(0.6)
A 		20.5
(-1.7)
A 		10.2
(-3)
A 		47
C 50.6
(0.1)
A 		85.6
(3)
A 		37.6
(-1)
A 		66.6
(1.4)
A 		17.1
(-2.7)
A 		13.9
(-3)
A 		72
avr 62.9
(2.4) 		68
(3) 		23
(-2.5) 		40.6
(-0.4) 		28.8
(-1.8) 		19.2
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 49.5
(3)
A 		4.1
(-2.9)
A 		8.8
(-2.3)
A 		3.2
(-3)
A 		46
B 17.1
(3)
A 		5.2
(-1.9)
A 		9.4
(-0.2)
A 		2.5
(-3)
A 		15
C 10.7
(-0.1)
A 		19
(3)
A 		2.8
(-3)
A 		18.9
(3)
A 		16
avr 25.8
(3) 		9.4
(-2.2) 		7
(-3) 		8.2
(-2.6) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 17.7
(1.7)
A 		21.6
(3)
A 		3.6
(-3)
A 		4.3
(-2.8)
A 		14.8
(0.7)
A 		8.1
(-1.5)
A 		18
B 14.7
(1.3)
A 		19.2
(3)
A 		3.6
(-3)
A 		10.2
(-0.5)
A 		8.3
(-1.2)
A 		3.8
(-2.9)
A 		16
C 18.8
(1)
A 		26.1
(3)
A 		9.6
(-1.6)
A 		13.4
(-0.5)
A 		5.5
(-2.7)
A 		4.6
(-3)
A 		22
avr 17.1
(1.1) 		22.3
(3) 		5.6
(-3) 		9.3
(-1.6) 		9.5
(-1.6) 		5.5
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184741_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18796
Sequence Type Exemplar sequence
Representative Public ID Y105E8A.B NCBI
Target Description Y105E8A.B /REP_DB=WormBase Gene ID /WP=CE24088 /TR=Q9NF23 /GB=CAB60842.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170933(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170933 NCBI Caenorhabditis elegans Y105E8A.1 (Y105E8A.1) mRNA, complete cds. 10/11 None
GENEFINDER00000013512 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14349318:14351923:-1 11/11 None
Y105E8A.1 ENSEMBL cdna:known chromosome:CEL140:I:14349751:14351923:-1 gene:Y105E8A.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013319 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14349660-14351854(-) 69.9 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105E8A.1
Entrez Gene 260216 Entrez gene
SwissProt Q9NF23 EMBL-EBI
WormBase CE36221 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60842 Hypothetical protein Y105E8A.1 [Caenorhabditis elegans] ref|NP_740929.2| Y105E8A.1 [Caenorhabditis elegans] 9.0E-72
blast CAB60842 Hypothetical protein Y105E8A.1 [Caenorhabditis elegans] ref|NP_740929.2| Y105E8A.1 [Caenorhabditis elegans] 3.0E-67
blast CAE64124 Hypothetical protein CBG08740 [Caenorhabditis briggsae] 5.0E-67
blast CAE64124 Hypothetical protein CBG08740 [Caenorhabditis briggsae] 1.0E-65
blast XP_624305 PREDICTED: similar to SH3 domain-binding glutamic acid-rich protein homolog (SH3BGR protein), partial [Apis mellifera] 5.0E-17
blast XP_624305 PREDICTED: similar to SH3 domain-binding glutamic acid-rich protein homolog (SH3BGR protein), partial [Apis mellifera] 3.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR006993 EMBL-EBI SH3-binding, glutamic acid-rich protein 4.5E-64
Sequence
Target Sequence 
>C. ELEGANS:184741_AT
attaggcatcccatttgactcaatcgacattacgaaaccagaacatgccgagcaacggag
gtttatgcgggagaatgcgtcgaagaagggtccgaatggagcagtcttgcctccacagtt
tttctatgaggacgagtatttgggggactacgaagactttgacacatctgtggaagctga
cacaattacagagtttctcagattactgccagatgctattggtaaccgaatccgagtgaa
tgatgctaacaagtgtgtggctgcgttgttcagtaagacgcagggcgcaggtgagtcaaa
tgtaaccactaatggggcagaggctggcggagacgatacaggtacaacaacagcaaagtc
cgatgagaagaaggcagaggaggatgatgaggaggatgaggaatgggatgaggatgaggg
agaggatgaagaggaaggagaggaaggatctaaggaagagaagaagaaggaggaagaagt
agatgcatctgaaacgataactctagcgaagccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTAGGCATCCCATTTGACTCAATC 206 13 102 Antisense
CGAAACCAGAACATGCCGAGCAACG 130 253 134 Antisense
GGTCCGAATGGAGCAGTCTTGCCTC 144 503 190 Antisense
CTTGCCTCCACAGTTTTTCTATGAG 475 219 207 Antisense
GGGGGACTACGAAGACTTTGACACA 60 499 243 Antisense
GAGTTTCTCAGATTACTGCCAGATG 263 399 292 Antisense
CAAGTGTGTGGCTGCGTTGTTCAGT 106 185 351 Antisense
GTTGTTCAGTAAGACGCAGGGCGCA 367 429 366 Antisense
CGCAGGGCGCAGGTGAGTCAAATGT 344 253 380 Antisense
GGCAGAGGCTGGCGGAGACGATACA 23 537 417 Antisense
GAAACGATAACTCTAGCGAAGCCAG 29 359 592 Antisense
Sequence Source Affymetrix Proprietary Database