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[184740_at]

Description C33F10.1 /REP_DB=WormBase Gene ID /WP=CE02528 /TR=Q18389 /GB=AAK31473.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 3.8
(-2.9)
A 		2.5
(-3)
A 		7
(-2.6)
A 		75.4
(3)
A 		73
B 38.1
(3)
A 		4.6
(-3)
A 		26.5
(0.9)
A 		20.3
(-0.2)
A 		34
C 4.6
(-2.9)
A 		8
(-2.5)
A 		3.2
(-3)
A 		64.6
(3)
P 		61
avr 15.5
(-1.7) 		5
(-3) 		12.2
(-2.1) 		53.4
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1038
1 2 3 4 5 6 range
A 11.4
(-3)
A 		4.1
(-3)
A 		4.5
(-3)
A 		64.9
(-2.6)
A 		351.7
(-1)
P 		1039.7
(3)
P 		1036
B 2
(-3)
A 		21.3
(-2.8)
A 		4.1
(-3)
A 		45.4
(-2.5)
A 		399.7
(1.7)
P 		514.9
(3)
P 		513
C 10.8
(-3)
A 		32.9
(-2.8)
A 		4.5
(-3)
A 		61.1
(-2.6)
A 		497.2
(0.9)
P 		765.1
(3)
P 		761
avr 8.1
(-3) 		19.4
(-2.9) 		4.4
(-3) 		57.1
(-2.6) 		416.2
(0.2) 		773.2
(3) 		769
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.4
(-2.5)
A 		0.5
(-3)
A 		1.8
(-2.3)
A 		11
(3)
A 		11
B 12.1
(3)
A 		1.1
(-3)
A 		6.1
(-0.3)
A 		4.3
(-1.3)
A 		11
C 1.5
(-2.8)
A 		2.3
(-2.3)
A 		1.1
(-3)
A 		10.9
(3)
P 		10
avr 5
(0) 		1.3
(-3) 		3
(-1.6) 		8.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 2.1
(-3)
A 		1.5
(-3)
A 		1
(-3)
A 		16.5
(-2.6)
A 		106.1
(-0.5)
P 		253.1
(3)
P 		252
B 0.7
(-3)
A 		7.1
(-2.8)
A 		1
(-3)
A 		12
(-2.6)
A 		162.4
(2.1)
P 		192
(3)
P 		191
C 4
(-2.9)
A 		10
(-2.8)
A 		1.1
(-3)
A 		12.3
(-2.7)
A 		160.9
(0.8)
P 		256.1
(3)
P 		255
avr 2.3
(-3) 		6.2
(-2.9) 		1
(-3) 		13.6
(-2.7) 		143.1
(0.7) 		233.7
(3) 		233
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184740_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4911
Sequence Type Exemplar sequence
Representative Public ID C33F10.1 NCBI
Target Description C33F10.1 /REP_DB=WormBase Gene ID /WP=CE02528 /TR=Q18389 /GB=AAK31473.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062468(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062468 NCBI Caenorhabditis elegans C33F10.1 (C33F10.1) mRNA, complete cds. 10/11 None
SNAP00000016474 ENSEMBL cdna:SNAP chromosome:CEL140:II:4835066:4835659:1 10/11 None
GENEFINDER00000016479 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4835066:4835659:1 11/11 None
C33F10.1 ENSEMBL cdna:known chromosome:CEL140:II:4835039:4835688:1 gene:C33F10.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4835064-4835658(+) 100.0 100.0
chrII:4834173-4834767(-) 94.35 94.35
Public Domain and Genome References
Gene Title
Ensembl C33F10.1
Entrez Gene 173834 Entrez gene
SwissProt Q18389 EMBL-EBI
WormBase CE29209 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T15754 hypothetical protein C33F10.1 - Caenorhabditis elegans 1.0E-97
blast NP_494868 C33F10.11 [Caenorhabditis elegans] gb|AAK31479.1| Hypothetical protein C33F10.11 [Caenorhabditis elegans] 1.0E-86
blast NP_494869 C33F10.1 [Caenorhabditis elegans] gb|AAK31473.2| Hypothetical protein C33F10.1 [Caenorhabditis elegans] 2.0E-86
blast NP_494869 C33F10.1 [Caenorhabditis elegans] gb|AAK31473.2| Hypothetical protein C33F10.1 [Caenorhabditis elegans] 9.0E-83
blast T15754 hypothetical protein C33F10.1 - Caenorhabditis elegans 6.0E-82
blast NP_494868 C33F10.11 [Caenorhabditis elegans] gb|AAK31479.1| Hypothetical protein C33F10.11 [Caenorhabditis elegans] 8.0E-74
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494869.1 2 4-23,100-119
C33F10.1 2 4-23,100-119
SNAP00000016474 2 4-23,100-119
GENEFINDER00000016479 2 7-29,116-133
Sequence
Target Sequence 
>C. ELEGANS:184740_AT
ctttttcagttgttcttctcattgctcttctggcagttttccacacgacgcttgcatcta
atggcgtctgccaaatcaccaaaaagcctctgatgcttccggctccaggcgatgtctaca
agaagccagtgcagttttacacgaatgtcacagtgccagtgttcgctccagtggtatcac
ctctcgaggtctacacaaacaccaccaaggcaactgcttttgctccagctcagaacatca
aagtggctgctattcttgaagaagatgctgatgcaattcatgttaagtcaatgagaatcg
ctggattcattgcacaatccatcctatttttgtttgtctacacaattgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTTTCAGTTGTTCTTCTCATTGC 183 223 62 Antisense
ACGCTTGCATCTAATGGCGTCTGCC 537 91 109 Antisense
GGCGTCTGCCAAATCACCAAAAAGC 559 539 124 Antisense
CCAAAAAGCCTCTGATGCTTCCGGC 251 275 140 Antisense
GAATGTCACAGTGCCAGTGTTCGCT 44 333 204 Antisense
AGTGGTATCACCTCTCGAGGTCTAC 515 57 231 Antisense
CACCTCTCGAGGTCTACACAAACAC 615 201 239 Antisense
TGCTGATGCAATTCATGTTAAGTCA 660 579 327 Antisense
TCATTGCACAATCCATCCTATTTTT 360 619 368 Antisense
ATCCATCCTATTTTTGTTTGTCTAC 12 41 378 Antisense
TTTTTGTTTGTCTACACAATTGTCA 250 675 388 Antisense
Sequence Source Affymetrix Proprietary Database