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[184739_at]

Description C33C12.5 /REP_DB=WormBase Gene ID /WP=CE08553 /TR=O16577 /GB=AAB66057.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 28.3
(-0.2)
A 		20.4
(-1.3)
A 		7.8
(-3)
A 		51.2
(3)
P 		43
B 25.4
(-1.2)
A 		59.3
(3)
A 		10.5
(-3)
A 		38.5
(0.4)
A 		49
C 22.9
(0)
A 		10.6
(-3)
A 		15.2
(-1.9)
A 		34.9
(3)
A 		24
avr 25.5
(-0.2) 		30.1
(0.7) 		11.2
(-3) 		41.5
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 19.3
(-1.9)
A 		12.9
(-3)
A 		43
(2)
A 		27.7
(-0.6)
A 		49.2
(3)
A 		45.2
(2.3)
A 		36
B 36.8
(0.6)
A 		41.9
(2.1)
M 		24.5
(-3)
A 		36.3
(0.5)
A 		41
(1.8)
A 		45
(3)
P 		21
C 19
(-2)
A 		59.3
(1)
A 		5.6
(-3)
A 		5.3
(-3)
A 		30.5
(-1.1)
A 		85.4
(3)
P 		80
avr 25
(-2.7) 		38
(-0.5) 		24.4
(-2.8) 		23.1
(-3) 		40.2
(-0.1) 		58.5
(3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 10.3
(3)
A 		4.4
(-1.3)
A 		2
(-3)
A 		7.5
(1)
P 		8
B 8.1
(-0.2)
A 		14.6
(3)
A 		2.4
(-3)
A 		8.2
(-0.1)
A 		12
C 7.6
(3)
A 		3.1
(-3)
A 		5.3
(-0.1)
A 		5.9
(0.7)
A 		5
avr 8.7
(3) 		7.4
(1.6) 		3.2
(-3) 		7.2
(1.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 3.6
(-3)
A 		4.6
(-2.5)
A 		9.4
(0.1)
A 		7
(-1.2)
A 		14.8
(3)
A 		11
(1)
A 		11
B 12.8
(0.8)
A 		13.9
(1.4)
M 		6
(-3)
A 		9.6
(-1)
A 		16.7
(2.9)
A 		16.8
(3)
P 		11
C 7
(-1.7)
A 		18.1
(0.7)
A 		1.4
(-2.9)
A 		1.1
(-3)
A 		9.9
(-1.1)
A 		28.6
(3)
P 		28
avr 7.8
(-2) 		12.2
(-0) 		5.6
(-3) 		5.9
(-2.9) 		13.8
(0.7) 		18.8
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184739_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5111
Sequence Type Exemplar sequence
Representative Public ID C33C12.5 NCBI
Target Description C33C12.5 /REP_DB=WormBase Gene ID /WP=CE08553 /TR=O16577 /GB=AAB66057.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061803(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061803 NCBI Caenorhabditis elegans C33C12.5 (C33C12.5) mRNA, complete cds. 11/11 None
SNAP00000027203 ENSEMBL cdna:SNAP chromosome:CEL140:II:2165638:2168410:-1 9/11 None
C33C12.5 ENSEMBL cdna:known chromosome:CEL140:II:2167757:2169464:-1 gene:C33C12.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027211 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2167755-2169463(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33C12.5
Entrez Gene 183152 Entrez gene
SwissProt O16577 EMBL-EBI
WormBase CE08553 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494204 C33C12.5 [Caenorhabditis elegans] gb|AAB66057.1| Hypothetical protein C33C12.5 [Caenorhabditis elegans] 0.0
blast NP_494204 C33C12.5 [Caenorhabditis elegans] gb|AAB66057.1| Hypothetical protein C33C12.5 [Caenorhabditis elegans] 1.0E-99
blast AAB37877 Hypothetical protein T16A1.8 [Caenorhabditis elegans] ref|NP_494178.1| T16A1.8 [Caenorhabditis elegans] 6.0E-88
blast AAB37877 Hypothetical protein T16A1.8 [Caenorhabditis elegans] ref|NP_494178.1| T16A1.8 [Caenorhabditis elegans] 1.0E-58
blast NP_494203 C33C12.4 [Caenorhabditis elegans] gb|AAB66054.2| Hypothetical protein C33C12.4 [Caenorhabditis elegans] 7.0E-58
blast AAC67480 Hypothetical protein F58E1.3 [Caenorhabditis elegans] ref|NP_494039.1| F58E1.3 [Caenorhabditis elegans] 2.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0011
Sequence
Target Sequence 
>C. ELEGANS:184739_AT
ctgacattgttagtccagaatccacagagaagaatgatagaagaacgttatgaatacatc
cgagaatttcgcattgtcaaattggaaatttactctgctgagattcaagaaagcccgctt
tatgatatgtttccgttactgaaatgcttgagttttgggccctttccaagacatcaatca
attcttattcagaatgctgacaaatttatatttaacgagtcaaaatttacactcaacgag
atattactatgcaactgttcctcaataagtgtagacaatcaagtcacttccgacaaggat
ttaaaccgtttcatgaagcactggatcaaaggatccaaccaccgactcgaactcttccaa
taccactgtcgaccaaataatagagctctaattgtagaatctgaactgtttaaaggtatc
gattacaaggtagaacagatggatcgttattggaaacaatttgaaattgagagaaacgat
ggcacaaaagcaatgatcgcatttggagaaaatggtttcgtttcctttatcatgtgtgtc
tcaccgttggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGACATTGTTAGTCCAGAATCCAC 254 237 811 Antisense
AGCCCGCTTTATGATATGTTTCCGT 244 83 922 Antisense
TGAAATGCTTGAGTTTTGGGCCCTT 475 571 950 Antisense
TTTTGGGCCCTTTCCAAGACATCAA 596 675 963 Antisense
GATATTACTATGCAACTGTTCCTCA 126 427 1050 Antisense
GACAATCAAGTCACTTCCGACAAGG 93 365 1084 Antisense
AAACCGTTTCATGAAGCACTGGATC 513 123 1113 Antisense
GGATCAAAGGATCCAACCACCGACT 620 503 1133 Antisense
TTCCAATACCACTGTCGACCAAATA 272 699 1165 Antisense
GTTTCGTTTCCTTTATCATGTGTGT 398 451 1325 Antisense
TATCATGTGTGTCTCACCGTTGGTC 106 659 1338 Antisense
Sequence Source Affymetrix Proprietary Database