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[184738_at]

Description Y57A10A.3 /REP_DB=WormBase Gene ID /WP=CE25508 /TR=Q9U206 /GB=CAB60773.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 0      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 5.7
(-2.7)
A 		7.5
(-1.8)
A 		5.1
(-3)
A 		17.3
(3)
A 		12
B 19.6
(-0.5)
A 		5.6
(-2.5)
A 		2.2
(-3)
A 		44.6
(3)
A 		42
C 2.4
(-3)
A 		4.7
(-2.6)
A 		39.3
(3)
A 		7.8
(-2.1)
A 		37
avr 9.2
(-1.9) 		5.9
(-3) 		15.5
(0.3) 		23.2
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 1.2
(-3)
A 		2.6
(-2.8)
A 		13.5
(-1.1)
A 		4.4
(-2.5)
A 		40.4
(3)
A 		33.9
(2)
A 		39
B 5.7
(-2.8)
A 		5.4
(-2.9)
A 		26.1
(-1)
A 		3.9
(-3)
A 		9.8
(-2.5)
A 		70.3
(3)
A 		66
C 6.7
(-2.6)
A 		2.7
(-3)
A 		3.5
(-2.9)
A 		2.9
(-3)
A 		38.9
(0.5)
A 		64.6
(3)
A 		62
avr 4.5
(-2.9) 		3.6
(-3) 		14.4
(-1.8) 		3.7
(-3) 		29.7
(-0) 		56.3
(3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.1
(1)
A 		1.6
(-1.5)
A 		1.3
(-3)
A 		2.5
(3)
A 		1
B 6.2
(0.8)
A 		1.4
(-2.4)
A 		0.5
(-3)
A 		9.5
(3)
A 		9
C 0.8
(-3)
A 		1.4
(-2.7)
A 		13.7
(3)
A 		1.3
(-2.8)
A 		13
avr 3
(-0.6) 		1.5
(-3) 		5.2
(3) 		4.4
(1.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 0.2
(-3)
A 		0.9
(-2.7)
A 		2.9
(-1.7)
A 		1.1
(-2.6)
A 		12.2
(3)
A 		8.3
(1.1)
A 		12
B 2
(-2.8)
A 		1.8
(-2.8)
A 		6.3
(-1.7)
A 		1
(-3)
A 		4
(-2.3)
A 		26.2
(3)
A 		25
C 2.5
(-2.5)
A 		0.8
(-2.9)
A 		0.9
(-2.9)
A 		0.6
(-3)
A 		12.6
(0.4)
A 		21.6
(3)
A 		21
avr 1.6
(-2.8) 		1.2
(-2.9) 		3.4
(-2.2) 		0.9
(-3) 		9.6
(-0.1) 		18.7
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184738_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3473
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.3 NCBI
Target Description Y57A10A.3 /REP_DB=WormBase Gene ID /WP=CE25508 /TR=Q9U206 /GB=CAB60773.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064182(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064182 NCBI Caenorhabditis elegans Y57A10A.3 (Y57A10A.3) mRNA, complete cds. 11/11 None
Y57A10A.3 ENSEMBL cdna:known chromosome:CEL140:II:12150795:12151780:1 gene:Y57A10A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026014 6/11 Cross Hyb Matching Probes None
GENEFINDER00000026055 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12150817-12151777(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10A.3
Entrez Gene 174855 Entrez gene
SwissProt Q9U206 EMBL-EBI
WormBase CE25508 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60773 Hypothetical protein Y57A10A.3 [Caenorhabditis elegans] ref|NP_496583.1| Y57A10A.3 [Caenorhabditis elegans] 1.0E-123
blast T31625 hypothetical protein Y57A10A.c - Caenorhabditis elegans 9.0E-60
blast CAB07289 Hypothetical protein T28A8.6 [Caenorhabditis elegans] ref|NP_499792.1| T28A8.6 [Caenorhabditis elegans] 5.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 5.3E-62
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496583.1 1 216-238
Y57A10A.3 1 216-238
Sequence
Target Sequence 
>C. ELEGANS:184738_AT
taatctggtcccgatcatggatcaaatggacaactacagtatcgggtcacggattcgagt
gatgttcgccttgtcggcaacagtgtcgaatgattttttagaactaatcgaaacgacggg
aactgttcaagtggatgagttcggaagaatttccaagtatacttcgaatgaaggaaaact
ttcgttggaaggaatctactttctcggtgcattcttcttcggagttagccgaaaaatcaa
atcaactggatcgaataattctacaatgaaggccaaagatttcctggtcacgttcaagta
cttccttctcggattggatttttccgagcttctggagctcagcacagtgttcaagagaaa
attgacgagtcagatattgcagagaagattctcatgtacagcgacatccgccatgctctc
caaaacctactctccacaatttctcaataactcgaaaatttctcattgttttttttttgc
aaaacttcccaatttgttatatttttctgttattttttcgctcataattgttattgcccc
atttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCTGGTCCCGATCATGGATCAA 232 635 174 Antisense
GGACAACTACAGTATCGGGTCACGG 576 525 201 Antisense
GTATCGGGTCACGGATTCGAGTGAT 133 455 212 Antisense
TTCGCCTTGTCGGCAACAGTGTCGA 543 695 238 Antisense
TCGAAACGACGGGAACTGTTCAAGT 449 601 281 Antisense
GAATTTCCAAGTATACTTCGAATGA 5 325 320 Antisense
GGAATCTACTTTCTCGGTGCATTCT 207 533 364 Antisense
ATAACTCGAAAATTTCTCATTGTTT 405 25 620 Antisense
TTTGCAAAACTTCCCAATTTGTTAT 601 667 649 Antisense
TTTCTGTTATTTTTTCGCTCATAAT 617 671 677 Antisense
CATAATTGTTATTGCCCCATTTTTT 484 213 696 Antisense
Sequence Source Affymetrix Proprietary Database