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[184737_s_at]

Description F40G9.11 /REP_DB=WormBase Gene ID /WP=CE19858 /TR=Q9TZ70 /GB=AAC68792.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 84      6grp_total > 99      4grp_total > 10      6grp_highest_sub > Cu      6grp_cgc > 79      6grp_high1_sub > Cu      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 359
1 2 3 4 range
A 695.7
(-3)
P 		792.8
(0.6)
P 		811.3
(1.3)
P 		855.9
(3)
P 		160
B 786.9
(-0.9)
P 		715.1
(-2.8)
P 		708.2
(-3)
P 		935.4
(3)
P 		227
C 711.3
(-3)
P 		751.2
(-2.3)
P 		716.3
(-2.9)
P 		1055.1
(3)
P 		344
avr 731.3
(-3) 		753
(-2.4) 		745.3
(-2.6) 		948.8
(3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 437
1 2 3 4 5 6 range
A 741.8
(0.9)
P 		513.5
(-2.9)
P 		509.5
(-3)
P 		574.5
(-1.9)
P 		840.4
(2.6)
P 		862.6
(3)
P 		353
B 716.8
(1.4)
P 		550.1
(-1.1)
P 		425.8
(-3)
P 		640.5
(0.2)
P 		823.2
(3)
P 		822.8
(3)
P 		397
C 617.6
(-0.6)
P 		528.5
(-2.1)
P 		545.4
(-1.9)
P 		477.2
(-3)
P 		833.6
(3)
P 		690.7
(0.6)
P 		356
avr 692.1
(0.5) 		530.7
(-2.3) 		493.6
(-3) 		564.1
(-1.8) 		832.4
(3) 		792
(2.3) 		339
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 253.3
(3)
P 		172.1
(-0.8)
P 		212.1
(1.1)
P 		125.3
(-3)
P 		128
B 251
(3)
P 		176.6
(-2.1)
P 		164.1
(-3)
P 		199.3
(-0.6)
P 		87
C 235.5
(1.8)
P 		216
(0.2)
P 		249.6
(3)
P 		177.9
(-3)
P 		72
avr 246.6
(3) 		188.2
(-1.4) 		208.6
(0.1) 		167.5
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 136.7
(-1.9)
P 		182.6
(0)
P 		110.9
(-3)
P 		145.7
(-1.5)
P 		253.6
(3)
P 		210
(1.2)
P 		143
B 249.4
(0.8)
P 		183.1
(-0.9)
P 		103.4
(-3)
P 		169.7
(-1.3)
P 		334.5
(3)
P 		306.8
(2.3)
P 		231
C 228.9
(1.6)
P 		161.2
(-0.7)
P 		138.8
(-1.5)
P 		96
(-3)
P 		269.8
(3)
P 		231.2
(1.7)
P 		174
avr 205
(0.1) 		175.6
(-0.9) 		117.7
(-3) 		137.1
(-2.3) 		286
(3) 		249.3
(1.7) 		168
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184737_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8217
Sequence Type Exemplar sequence
Representative Public ID F40G9.11 NCBI
Target Description F40G9.11 /REP_DB=WormBase Gene ID /WP=CE19858 /TR=Q9TZ70 /GB=AAC68792.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064772(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064772 NCBI Caenorhabditis elegans MaX-Like family member (mxl-2) (mxl-2) mRNA, complete cds. 11/11 None
SNAP00000021774 ENSEMBL cdna:SNAP chromosome:CEL140:III:187021:188123:-1 11/11 None
GENEFINDER00000021787 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:187021:188123:-1 11/11 None
F40G9.11 ENSEMBL cdna:known chromosome:CEL140:III:187013:188130:-1 gene:F40G9.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:187020-188123(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mxl-2
Ensembl F40G9.11
Entrez Gene 175184 Entrez gene
SwissProt Q9TZ70 EMBL-EBI
WormBase CE19858 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68792 Max-like protein 2 [Caenorhabditis elegans] ref|NP_497173.1| MaX-Like family member (mxl-2) [Caenorhabditis elegans] 9.0E-89
blast CAE69518 Hypothetical protein CBG15727 [Caenorhabditis briggsae] 5.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 4.5E-14
Sequence
Target Sequence 
>C. ELEGANS:184737_S_AT
gatatggacctaatgtcgccggacggctcggcgagctccccatcggccccaaacacgcca
gcgacgaattccggcggatttagctcggatagaaagaaggcgacgcacttgaggtgtgaa
cggcagcgaagagaagctataaatagcggatacagtgatttaaaggatttaattcctcag
acaacgacttcgctgggatgtaaaactacaaacgccgcgattttattcagagcctgcgac
ttcatgtcccaactgaaaaccgacatctccgacgccgacaagcaactggcccagctcaac
gcacaagcggccgcactggaaatgattgcctcagagtacgagcagatggcttcttcggtt
cctgacgccggccagtccacgattcaagtcaaaatgctccaacttctcctcgacgactgc
ttcacctcgttctcctcccaagtggacttcaccacgtacgcaacgatcaccagaacgctc
ctgtcgtgggtggagagcctggcgccaaatgcggagccattcaagtcgacagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATGGACCTAATGTCGCCGGACG 114 423 61 Antisense
ACACGCCAGCGACGAATTCCGGCGG 352 109 113 Antisense
TAATTCCTCAGACAACGACTTCGCT 685 631 230 Antisense
AAACGCCGCGATTTTATTCAGAGCC 99 127 270 Antisense
TATTCAGAGCCTGCGACTTCATGTC 571 663 284 Antisense
TCCCAACTGAAAACCGACATCTCCG 562 589 307 Antisense
ACAAGCGGCCGCACTGGAAATGATT 641 111 363 Antisense
TACGAGCAGATGGCTTCTTCGGTTC 284 649 397 Antisense
AAGTGGACTTCACCACGTACGCAAC 370 159 500 Antisense
CGTACGCAACGATCACCAGAACGCT 526 243 515 Antisense
TGCGGAGCCATTCAAGTCGACAGCC 428 583 570 Antisense
Sequence Source Affymetrix Proprietary Database