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[184736_at]

Description Y42G9A.6 /REP_DB=WormBase Gene ID /WP=CE21867 /TR=Q9N4Z3 /GB=AAF60553.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 38.6
(-3)
A 		67.6
(-2)
A 		89.5
(-1.3)
P 		217.9
(3)
P 		179
B 65.6
(-3)
A 		95.3
(-1.5)
A 		123
(-0.1)
A 		184.8
(3)
P 		119
C 66.9
(-3)
A 		127
(-0.6)
A 		99.2
(-1.7)
A 		218.5
(3)
P 		152
avr 57
(-3) 		96.6
(-1.4) 		103.9
(-1.1) 		207.1
(3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 53.6
(-3)
A 		55.3
(-2.9)
P 		60.7
(-2.7)
A 		134.7
(-0.1)
P 		149.8
(0.5)
P 		219.3
(3)
P 		166
B 67.3
(-1.9)
A 		25.4
(-3)
A 		62
(-2)
A 		85.9
(-1.4)
P 		252.1
(3)
P 		250.1
(2.9)
P 		227
C 48.4
(-3)
A 		62.7
(-2.5)
A 		49.1
(-3)
A 		92.4
(-1.4)
A 		183.7
(1.9)
P 		215
(3)
P 		167
avr 56.4
(-2.7) 		47.8
(-3) 		57.3
(-2.7) 		104.3
(-1.1) 		195.2
(1.9) 		228.1
(3) 		180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 14.1
(-3)
A 		14.7
(-2.8)
A 		23.4
(0.1)
P 		31.9
(3)
P 		18
B 20.9
(-3)
A 		23.5
(-2.2)
A 		28.5
(-0.5)
A 		39.4
(3)
P 		19
C 22.2
(-3)
A 		36.5
(2.9)
A 		34.6
(2.1)
A 		36.8
(3)
P 		15
avr 19.1
(-3) 		24.9
(-0.9) 		28.8
(0.4) 		36
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 9.9
(-3)
A 		19.6
(-1.7)
P 		13.2
(-2.5)
A 		34.2
(0.4)
P 		45.2
(1.9)
P 		53.4
(3)
P 		44
B 23.4
(-2)
A 		8.5
(-3)
A 		15.1
(-2.6)
A 		22.8
(-2.1)
P 		102.4
(3)
P 		93.3
(2.4)
P 		94
C 18
(-2.4)
A 		19.1
(-2.3)
A 		12.5
(-3)
A 		18.6
(-2.4)
A 		59.4
(1.7)
P 		72
(3)
P 		60
avr 17.1
(-2.6) 		15.7
(-2.8) 		13.6
(-3) 		25.2
(-1.8) 		69
(2.6) 		72.9
(3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184736_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6975
Sequence Type Exemplar sequence
Representative Public ID Y42G9A.6 NCBI
Target Description Y42G9A.6 /REP_DB=WormBase Gene ID /WP=CE21867 /TR=Q9N4Z3 /GB=AAF60553.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065931(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065931 NCBI Caenorhabditis elegans Y42G9A.6 (Y42G9A.6) mRNA, complete cds. 11/11 A 
SNAP00000011130 ENSEMBL cdna:SNAP chromosome:CEL140:III:6148998:6149525:-1 11/11 None
GENEFINDER00000011135 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6148998:6149525:-1 11/11 None
Y42G9A.6 ENSEMBL cdna:known chromosome:CEL140:III:6142063:6149530:-1 gene:Y42G9A.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6148996-6149524(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y42G9A.6
Entrez Gene 175864 Entrez gene
SwissProt Q9N4Z3 EMBL-EBI
WormBase CE33223 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13784_AT ABC transporter family protein at
ATH1-121501:263726_AT ABC transporter family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498332 Y42G9A.6 [Caenorhabditis elegans] gb|AAF60553.2| Hypothetical protein Y42G9A.6 [Caenorhabditis elegans] 0.0
blast CAE73620 Hypothetical protein CBG21114 [Caenorhabditis briggsae] 0.0
blast CAE73643 Hypothetical protein CBG21143 [Caenorhabditis briggsae] 1.0E-135
blast NP_498332 Y42G9A.6 [Caenorhabditis elegans] gb|AAF60553.2| Hypothetical protein Y42G9A.6 [Caenorhabditis elegans] 1.0E-56
blast CAE73623 Hypothetical protein CBG21117 [Caenorhabditis briggsae] 4.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR003439 EMBL-EBI ABC transporter 1.9E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498332.2 5 430-452,515-537,541-563,568-590,658-680
Y42G9A.6 5 430-452,515-537,541-563,568-590,658-680
Sequence
Target Sequence 
>C. ELEGANS:184736_AT
gttattcaaggttcaatcgagtcaatgagtgtagtggattcaacttctgatattgataaa
gctgataaatcctttatggaagagcttcgaccaaaaatgctgctgacatggcacgatatt
tcagtttcggactcttcagaagactactcttcaaatagtggactttttggaaaatgttgc
ccgatcaaagtcggtgatgtagagaagatgtcagtggaaaaacggattttagatagtgtg
ttcggagtggctcgacccggagaggttaccgcgatcattggacccagtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATTCAAGGTTCAATCGAGTCAA 421 447 28 Antisense
GAGTGTAGTGGATTCAACTTCTGAT 187 401 54 Antisense
AAATCCTTTATGGAAGAGCTTCGAC 69 119 94 Antisense
GAGCTTCGACCAAAAATGCTGCTGA 421 387 109 Antisense
GCTGCTGACATGGCACGATATTTCA 548 297 126 Antisense
GATATTTCAGTTTCGGACTCTTCAG 217 427 142 Antisense
GGACTCTTCAGAAGACTACTCTTCA 348 525 156 Antisense
GGAAAATGTTGCCCGATCAAAGTCG 111 529 196 Antisense
TAGTGTGTTCGGAGTGGCTCGACCC 491 651 261 Antisense
TCGACCCGGAGAGGTTACCGCGATC 362 585 279 Antisense
TACCGCGATCATTGGACCCAGTGGA 551 647 294 Antisense
Sequence Source Affymetrix Proprietary Database