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[184734_at]

Description W08E12.6 /REP_DB=WormBase Gene ID /WP=CE21276 /TR=Q9N5B2 /GB=AAF39985.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 42      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 865
1 2 3 4 range
A 41.6
(-3)
A 		745.1
(3)
P 		418.5
(0.2)
P 		175.3
(-1.9)
A 		704
B 75
(-2.8)
A 		716.5
(3)
P 		363.3
(-0.2)
P 		53.3
(-3)
A 		663
C 80.5
(-3)
A 		906.7
(3)
P 		443.2
(-0.4)
P 		78.5
(-3)
A 		828
avr 65.7
(-3) 		789.4
(3) 		408.3
(-0.2) 		102.4
(-2.7) 		724

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 413
1 2 3 4 5 6 range
A 494.4
(3)
P 		398.6
(1.4)
P 		137.3
(-3)
P 		151.4
(-2.7)
P 		143
(-2.9)
P 		135.3
(-3)
A 		359
B 502.5
(3)
P 		436.5
(2)
P 		237
(-0.9)
P 		114.3
(-2.7)
A 		154.1
(-2.1)
A 		91.5
(-3)
A 		411
C 438.5
(2)
P 		504.3
(3)
P 		177.7
(-1.7)
P 		128.2
(-2.5)
A 		136.3
(-2.4)
A 		91.6
(-3)
A 		413
avr 478.5
(3) 		446.5
(2.5) 		184
(-1.7) 		131.3
(-2.6) 		144.5
(-2.4) 		106.1
(-3) 		372
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 249
1 2 3 4 range
A 15.1
(-3)
A 		161.7
(3)
P 		109.4
(0.9)
P 		25.7
(-2.6)
A 		147
B 23.9
(-2.5)
A 		177
(3)
P 		84.2
(-0.4)
P 		11.4
(-3)
A 		166
C 26.6
(-2.7)
A 		260.7
(3)
P 		154.5
(0.4)
P 		13.2
(-3)
A 		248
avr 21.9
(-2.8) 		199.8
(3) 		116
(0.3) 		16.8
(-3) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 91.1
(0.3)
P 		141.8
(3)
P 		29.9
(-3)
P 		38.4
(-2.5)
P 		43.2
(-2.3)
P 		33
(-2.8)
A 		112
B 174.8
(3)
P 		145.3
(1.8)
P 		57.6
(-1.9)
P 		30.3
(-3)
A 		62.6
(-1.7)
A 		34.1
(-2.8)
A 		145
C 162.5
(3)
P 		153.9
(2.6)
P 		45.2
(-2.1)
P 		25.8
(-3)
A 		44.1
(-2.2)
A 		30.7
(-2.8)
A 		137
avr 142.8
(2.8) 		147
(3) 		44.2
(-2.3) 		31.5
(-3) 		50
(-2) 		32.6
(-2.9) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184734_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11185
Sequence Type Exemplar sequence
Representative Public ID W08E12.6 NCBI
Target Description W08E12.6 /REP_DB=WormBase Gene ID /WP=CE21276 /TR=Q9N5B2 /GB=AAF39985.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067911(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067911 NCBI Caenorhabditis elegans W08E12.6 (W08E12.6) mRNA, complete cds. 11/11 None
SNAP00000023320 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3298625:3299683:1 10/11 None
GENEFINDER00000023328 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3298172:3299683:1 11/11 None
W08E12.6 ENSEMBL cdna:known chromosome:CEL140:IV:3298625:3299683:1 gene:W08E12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3298630-3299689(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W08E12.6
Entrez Gene 189294 Entrez gene
SwissProt Q9N5B2 EMBL-EBI
WormBase CE21276 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39985 Hypothetical protein W08E12.6 [Caenorhabditis elegans] ref|NP_500312.1| W08E12.6 [Caenorhabditis elegans] 1.0E-12
blast AAF39985 Hypothetical protein W08E12.6 [Caenorhabditis elegans] ref|NP_500312.1| W08E12.6 [Caenorhabditis elegans] 2.0E-12
blast CAE58484 Hypothetical protein CBG01628 [Caenorhabditis briggsae] 7.0E-10
blast CAE58484 Hypothetical protein CBG01628 [Caenorhabditis briggsae] 9.0E-10
blast CAE58484 Hypothetical protein CBG01628 [Caenorhabditis briggsae] 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:184734_AT
ctccatgcttcggaatcggctgcaatcagccaccgattgtgattgccggacccccgccat
gctttgattgcccaccaccagcgccgatcttcgttgctccaccaccaccaccatgctttg
gaccagcttgcccaccaccatgcttcggaccagcctgtgttccacttgctccaatcatcg
tgaacgggcctccaccatgttttgggccagcttgcccaccaccatgcttcggcccagctt
gtgctccacctgctccaattatcgttaacgggccaccaccatgcttcgggccagcttgcc
cgccaccatgtttcggcccagcttgtgctccatctgctccaattatcgttaacgggccac
caccatgcttcgggccagcttgcccaccaccgtgcttcggaccagcctgcgccccaccac
caccagctccgatcctcttcggatctgtcacttgctgcgctccaaataactattcctgct
gtggatccttgttccgtaagcgaatctttagcaagcgatccgatgataagacggaggcta
ccaccgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCATGCTTCGGAATCGGCTGCAA 112 235 83 Antisense
ATCGGCTGCAATCAGCCACCGATTG 685 33 97 Antisense
TTGCTCCAATCATCGTGAACGGGCC 417 673 248 Antisense
CACCATGTTTTGGGCCAGCTTGCCC 558 201 275 Antisense
CACCTGCTCCAATTATCGTTAACGG 271 201 329 Antisense
CTCCATCTGCTCCAATTATCGTTAA 699 235 410 Antisense
TCACTTGCTGCGCTCCAAATAACTA 351 627 530 Antisense
AACTATTCCTGCTGTGGATCCTTGT 308 139 550 Antisense
GGATCCTTGTTCCGTAAGCGAATCT 453 513 565 Antisense
GCGAATCTTTAGCAAGCGATCCGAT 251 289 582 Antisense
TGATAAGACGGAGGCTACCACCGAG 278 565 606 Antisense
Sequence Source Affymetrix Proprietary Database