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[184733_at]

Description T06C12.10 /REP_DB=WormBase Gene ID /WP=CE16360 /TR=O18037 /GB=CAB03296.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_highest_nonorm > 52      6grp_total > 41      4grp_total > 56      6grp_highest_sub > 04      6grp_cgc > 60      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 437
1 2 3 4 range
A 649.1
(-1)
P 		648.8
(-1)
P 		926.3
(3)
P 		507.5
(-3)
P 		419
B 580.4
(-3)
P 		702.2
(-0.8)
P 		906.9
(3)
P 		612.8
(-2.4)
P 		327
C 590.9
(-2.8)
P 		728.1
(-0.5)
P 		944.1
(3)
P 		578
(-3)
P 		366
avr 606.8
(-2.3) 		693
(-0.9) 		925.8
(3) 		566.1
(-3) 		360

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 473
1 2 3 4 5 6 range
A 594.8
(-0.3)
P 		775.5
(3)
P 		577.1
(-0.6)
P 		669.6
(1.1)
P 		693.3
(1.5)
P 		447.3
(-3)
P 		328
B 798.6
(1.3)
P 		692.9
(-0.2)
P 		920.2
(3)
P 		802.3
(1.3)
P 		741.6
(0.5)
P 		499.8
(-3)
P 		420
C 792.8
(1.6)
P 		666
(-0.7)
P 		755.2
(0.9)
P 		872.7
(3)
P 		677.2
(-0.5)
P 		537.2
(-3)
P 		336
avr 728.7
(1.9) 		711.5
(1.5) 		750.8
(2.4) 		781.5
(3) 		704
(1.4) 		494.8
(-3) 		287
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 236.4
(2.8)
P 		140.8
(-0.6)
P 		242.2
(3)
P 		74.3
(-3)
P 		168
B 185.1
(1.1)
P 		173.4
(0.2)
P 		210.2
(3)
P 		130.6
(-3)
P 		80
C 195.6
(-0.5)
P 		209.3
(-0.1)
P 		329
(3)
P 		97.5
(-3)
P 		232
avr 205.7
(0.9) 		174.5
(-0.2) 		260.5
(3) 		100.8
(-3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 109.6
(-3)
P 		275.8
(3)
P 		125.7
(-2.4)
P 		169.8
(-0.8)
P 		209.2
(0.6)
P 		108.9
(-3)
P 		167
B 277.9
(1.8)
P 		230.6
(-0.7)
P 		223.4
(-1.1)
P 		212.5
(-1.6)
P 		301.3
(3)
P 		186.4
(-3)
P 		115
C 293.9
(3)
P 		203.2
(-1.6)
P 		192.2
(-2.2)
P 		175.5
(-3)
P 		219.1
(-0.8)
P 		179.8
(-2.8)
P 		118
avr 227.1
(1.9) 		236.5
(2.5) 		180.4
(-1.4) 		185.9
(-1.1) 		243.2
(3) 		158.4
(-3) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184733_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14273
Sequence Type Exemplar sequence
Representative Public ID T06C12.10 NCBI
Target Description T06C12.10 /REP_DB=WormBase Gene ID /WP=CE16360 /TR=O18037 /GB=CAB03296.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074570(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074570 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-217) (tag-217) mRNA, complete cds. 11/11 None
SNAP00000035468 ENSEMBL cdna:SNAP chromosome:CEL140:V:15889458:15891429:-1 11/11 None
GENEFINDER00000035475 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15889458:15891429:-1 11/11 None
T06C12.10.1 ENSEMBL cdna:known chromosome:CEL140:V:15889325:15891435:-1 gene:T06C12.10 11/11 None
T06C12.10.2 ENSEMBL cdna:known chromosome:CEL140:V:15889458:15891437:-1 gene:T06C12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15889457-15891429(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-217
Ensembl T06C12.10
Entrez Gene 188169 Entrez gene
SwissProt O18037 EMBL-EBI
WormBase CE31986 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03296 Hypothetical protein T06C12.10 [Caenorhabditis elegans] ref|NP_506971.2| Temporarily Assigned Gene name family member (tag-217) [Caenorhabditis elegans] 0.0
blast CAE59219 Hypothetical protein CBG02537 [Caenorhabditis briggsae] 1.0E-157
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506971.2 3 67-89,363-385,405-427
T06C12.10.1 3 67-89,363-385,405-427
T06C12.10.2 3 67-89,363-385,405-427
SNAP00000035468 3 67-89,363-385,405-427
GENEFINDER00000035475 3 67-89,363-385,405-427
Sequence
Target Sequence 
>C. ELEGANS:184733_AT
gcgtcagtcacgcaaattccatactgcaaggatcggcaagggtttcatgcagcgtttgaa
cagatattcttcggtacctcccacgcccgcctctaccttgtcgggaactttctcggcgtt
gtatgttcgtcggggatgtcatcaatgatgaaaaagtcggctctagatgagtgtggtgga
atggaaaagtttggagaatacctggctgaagactatttcttcgcgaaagctctcaccagt
cgtggatgcaaagctgcaatctccacacatccagctcttcagaactctgcgtcggttacc
gtactgtcatttttcaatcggatcggaagatggatcaagcttcgaattgcaatgatgccg
catcttatggttgttgagccattgcagaatggaaagttcaactttacgccattcctattt
gtgttcatctggcttttccgtgagttcacatcgccgttcatctttatcaaagcagttctt
gccccaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTCAGTCACGCAAATTCCATACT 705 291 682 Antisense
ACTTTCTCGGCGTTGTATGTTCGTC 213 103 788 Antisense
AGCTCTCACCAGTCGTGGATGCAAA 131 81 909 Antisense
ATGCAAAGCTGCAATCTCCACACAT 385 43 927 Antisense
CTCTGCGTCGGTTACCGTACTGTCA 245 229 966 Antisense
GATGCCGCATCTTATGGTTGTTGAG 242 415 1035 Antisense
AACTTTACGCCATTCCTATTTGTGT 499 139 1081 Antisense
CTATTTGTGTTCATCTGGCTTTTCC 688 223 1096 Antisense
TGGCTTTTCCGTGAGTTCACATCGC 303 545 1111 Antisense
TTCACATCGCCGTTCATCTTTATCA 399 687 1126 Antisense
TATCAAAGCAGTTCTTGCCCCAACC 695 657 1146 Antisense
Sequence Source Affymetrix Proprietary Database