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[184732_at]

Description F35F10.2 /REP_DB=WormBase Gene ID /WP=CE09927 /TR=Q9GYT6 /GB=AAF99931.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 17      6grp_cgc > 37      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 4.5
(-3)
A 		18
(-1.6)
A 		37.1
(0.4)
A 		62.5
(3)
A 		58
B 24.4
(-1.3)
A 		20.2
(-2.1)
A 		15.7
(-3)
A 		47.2
(3)
A 		32
C 6.8
(-2.5)
A 		33.2
(0.1)
A 		1.8
(-3)
A 		62.9
(3)
A 		61
avr 11.9
(-3) 		23.8
(-1.4) 		18.2
(-2.2) 		57.5
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 26.3
(-0.1)
A 		3.1
(-2.8)
A 		1.6
(-3)
A 		6
(-2.5)
A 		3
(-2.8)
A 		52.8
(3)
A 		51
B 2.1
(-3)
A 		2
(-3)
A 		9.3
(-1.1)
A 		25
(3)
A 		5.5
(-2.1)
A 		11.2
(-0.6)
A 		23
C 0.7
(-3)
A 		9.8
(3)
A 		6
(0.5)
A 		6.6
(0.9)
A 		2.8
(-1.6)
A 		1.9
(-2.2)
A 		9
avr 9.7
(-1.1) 		5
(-2.6) 		5.6
(-2.4) 		12.5
(-0.1) 		3.8
(-3) 		22
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.6
(-3)
A 		3.9
(-1.3)
A 		9.7
(3)
A 		9.2
(2.6)
A 		8
B 7.8
(0.9)
A 		5
(-1.7)
A 		3.6
(-3)
A 		10.1
(3)
A 		7
C 2.2
(-2)
A 		9.5
(2.3)
A 		0.6
(-3)
A 		10.6
(3)
A 		10
avr 3.9
(-3) 		6.1
(-0.8) 		4.6
(-2.3) 		10
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.8
(-0.9)
A 		1.1
(-2.6)
A 		0.3
(-3)
A 		1.5
(-2.4)
A 		0.9
(-2.7)
A 		12.9
(3)
A 		13
B 0.7
(-3)
A 		0.7
(-3)
A 		2.3
(-1.4)
A 		6.6
(3)
A 		2.2
(-1.5)
A 		4.2
(0.6)
A 		6
C 0.3
(-3)
A 		3
(3)
A 		1.5
(-0.3)
A 		1.3
(-0.8)
A 		0.9
(-1.7)
A 		0.6
(-2.3)
A 		3
avr 1.9
(-2.2) 		1.6
(-2.6) 		1.4
(-2.9) 		3.1
(-0.7) 		1.3
(-3) 		5.9
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184732_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15808
Sequence Type Exemplar sequence
Representative Public ID F35F10.2 NCBI
Target Description F35F10.2 /REP_DB=WormBase Gene ID /WP=CE09927 /TR=Q9GYT6 /GB=AAF99931.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071514(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071514 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-3) (srbc-3) mRNA, complete cds. 11/11 None
GENEFINDER00000011255 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3308295:3309515:1 10/11 None
F35F10.2 ENSEMBL cdna:known chromosome:CEL140:V:3308295:3309515:1 gene:F35F10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3308294-3309347(+) 100.0 100.0
chrV:3383749-3384798(+) 92.11 92.11
Public Domain and Genome References
Gene Title
Gene Symbol srbc-3
Ensembl F35F10.2
Entrez Gene 185309 Entrez gene
SwissProt Q9GYT6 EMBL-EBI
WormBase CE38070 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99931 Serpentine receptor, class bc (class b-like) protein 3 [Caenorhabditis elegans] ref|NP_503915.2| Serpentine Receptor, class BC (class B-like) family member (srbc-3) [Caenorhabditis elegans] 1.0E-161
blast AAF99931 Serpentine receptor, class bc (class b-like) protein 3 [Caenorhabditis elegans] ref|NP_503915.2| Serpentine Receptor, class BC (class B-like) family member (srbc-3) [Caenorhabditis elegans] 1.0E-130
blast NP_503896 Serpentine Receptor, class BC (class B-like) family member (srbc-5) [Caenorhabditis elegans] gb|AAC48118.3| Serpentine receptor, class bc (class b-like) protein 5 [Caenorhabditis elegans] 1.0E-122
blast AAF99938 Serpentine receptor, class bc (class b-like) protein 1 [Caenorhabditis elegans] ref|NP_503913.1| Serpentine Receptor, class BC (class B-like) family member (srbc-1) [Caenorhabditis elegans] 1.0E-119
blast NP_503896 Serpentine Receptor, class BC (class B-like) family member (srbc-5) [Caenorhabditis elegans] gb|AAC48118.3| Serpentine receptor, class bc (class b-like) protein 5 [Caenorhabditis elegans] 2.0E-95
blast AAF99938 Serpentine receptor, class bc (class b-like) protein 1 [Caenorhabditis elegans] ref|NP_503913.1| Serpentine Receptor, class BC (class B-like) family member (srbc-1) [Caenorhabditis elegans] 2.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.6E-88
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 8.0E-64
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503915.2 7 15-36,49-71,86-108,129-151,185-204,217-239,254-276
F35F10.2 7 15-36,49-71,86-108,129-151,185-204,217-239,254-276
GENEFINDER00000011255 5 15-36,49-71,157-179,211-230,245-267
Sequence
Target Sequence 
>C. ELEGANS:184732_AT
tttctcgacgtggcgtacagtgctctgggttgtgcctatatgacgttctgcattttgtat
tcatattttactgtggagctccgagagcagcaagtttttattctttatatagggtttcca
ctccaaactgcaggagctatgagatcaattgtggctgtggcgatttctctggaaagggtc
ttggccatttacaccccaattatgtttcataagtatcgcgattcatatccttctataatt
attctgatgttggctattagcctgtcaatgtttgaaaatcttcttatgtaccttttttgt
actatgaatatatccgcaatgccaacagactgtggagttttgcgatgttcagttgatcct
tgttatttcgacttttggacaactgatagagcggtgatattcgcttttaacattgcattt
tccggtttactctcaacaagactgctaatttttgataaatcactgggtcatcatgctaac
agtgagcattcaaagataaatcatattgccttggtcgacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCTCGACGTGGCGTACAGTGCTC 138 669 172 Antisense
GTGCTCTGGGTTGTGCCTATATGAC 34 479 191 Antisense
TCATATTTTACTGTGGAGCTCCGAG 240 617 232 Antisense
ATATAGGGTTTCCACTCCAAACTGC 465 9 278 Antisense
GTATCGCGATTCATATCCTTCTATA 182 455 384 Antisense
TGGCTATTAGCCTGTCAATGTTTGA 118 537 422 Antisense
ATATCCGCAATGCCAACAGACTGTG 438 19 481 Antisense
GTTTTGCGATGTTCAGTTGATCCTT 54 449 508 Antisense
GTTGATCCTTGTTATTTCGACTTTT 26 435 523 Antisense
TCCGGTTTACTCTCAACAAGACTGC 217 583 592 Antisense
TAAATCATATTGCCTTGGTCGACGC 198 641 668 Antisense
Sequence Source Affymetrix Proprietary Database