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[184731_at] 7TM chemoreceptor, srw family

Description H06H21.1 /REP_DB=WormBase Gene ID /WP=CE17960 /TR=Q9TXU9 /GB=AAK29843.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 29      6grp_cgc > 41      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 65.5
(1)
A 		87.5
(3)
A 		19.9
(-3)
A 		56.4
(0.2)
A 		68
B 78.4
(3)
A 		77.8
(2.9)
A 		26
(-3)
A 		66.4
(1.6)
A 		52
C 90.2
(2.2)
A 		56.8
(0.1)
A 		8.4
(-3)
A 		102.7
(3)
A 		94
avr 78
(3) 		74
(2.6) 		18.1
(-3) 		75.2
(2.7) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 111.1
(3)
A 		57.6
(-0.2)
A 		67.6
(0.4)
A 		11.1
(-3)
A 		26.5
(-2.1)
A 		18.7
(-2.5)
A 		100
B 60.1
(3)
A 		55.4
(2.4)
A 		29.1
(-0.8)
A 		48.1
(1.5)
A 		26.7
(-1.1)
A 		11.1
(-3)
A 		49
C 33.5
(-2.2)
A 		89.9
(3)
A 		24.3
(-3)
A 		58.2
(0.1)
A 		38.5
(-1.7)
A 		35.6
(-2)
A 		66
avr 68.2
(3) 		67.6
(2.9) 		40.3
(-0.6) 		39.1
(-0.8) 		30.6
(-1.9) 		21.8
(-3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 23.9
(3)
A 		19
(1.4)
A 		5.2
(-3)
A 		8.3
(-2)
A 		19
B 25
(3)
A 		19.2
(1.2)
A 		6
(-3)
A 		14.2
(-0.4)
A 		19
C 29.9
(3)
A 		16.3
(-0)
A 		2.9
(-3)
A 		17.3
(0.2)
A 		27
avr 26.3
(3) 		18.2
(0.8) 		4.7
(-3) 		13.3
(-0.6) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 20.5
(3)
A 		20.5
(3)
A 		14.7
(1)
A 		2.8
(-3)
A 		8
(-1.2)
A 		4.5
(-2.4)
A 		18
B 20.9
(3)
A 		18.4
(2.1)
A 		7.1
(-1.9)
A 		12.7
(0.1)
A 		10.8
(-0.6)
A 		4.1
(-3)
A 		17
C 12.4
(-1.2)
A 		27.4
(3)
A 		6.2
(-3)
A 		11.7
(-1.4)
A 		12.4
(-1.2)
A 		11.9
(-1.4)
A 		21
avr 17.9
(1.4) 		22.1
(3) 		9.3
(-2) 		9.1
(-2.1) 		10.4
(-1.6) 		6.8
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184731_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11108
Sequence Type Exemplar sequence
Representative Public ID H06H21.1 NCBI
Target Description H06H21.1 /REP_DB=WormBase Gene ID /WP=CE17960 /TR=Q9TXU9 /GB=AAK29843.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068251(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068251 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-94) (srw-94) mRNA, complete cds. 10/11 None
GENEFINDER00000018264 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4812744:4817306:1 11/11 None
H06H21.1 ENSEMBL cdna:known chromosome:CEL140:IV:4814475:4817306:1 gene:H06H21.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018256 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4814420-4817312(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-94
Ensembl H06H21.1
Entrez Gene 186698 Entrez gene
SwissProt Q9TXU9 EMBL-EBI
WormBase CE34044 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29843 Serpentine receptor, class w protein 94 [Caenorhabditis elegans] ref|NP_500652.2| Serpentine Receptor, class W family member (srw-94) [Caenorhabditis elegans] 0.0
blast AAK29844 Serpentine receptor, class w protein 95 [Caenorhabditis elegans] ref|NP_500651.2| Serpentine Receptor, class W family member (srw-95) [Caenorhabditis elegans] 1.0E-150
blast AAK29844 Serpentine receptor, class w protein 95 [Caenorhabditis elegans] ref|NP_500651.2| Serpentine Receptor, class W family member (srw-95) [Caenorhabditis elegans] 1.0E-146
blast AAC78163 Serpentine receptor, class w protein 98 [Caenorhabditis elegans] ref|NP_503479.2| Serpentine Receptor, class W family member (srw-98) [Caenorhabditis elegans] 8.0E-73
blast AAC78163 Serpentine receptor, class w protein 98 [Caenorhabditis elegans] ref|NP_503479.2| Serpentine Receptor, class W family member (srw-98) [Caenorhabditis elegans] 2.0E-72
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500652.2 6 38-60,70-92,162-184,234-256,273-295,310-332
H06H21.1 6 38-60,70-92,162-184,234-256,273-295,310-332
GENEFINDER00000018264 10 25-47,97-119,154-176,191-213,306-328,338-360,430-452,502-524,561-583,598-620
Sequence
Target Sequence 
>C. ELEGANS:184731_AT
ctccctctcacttttatattttatttccgatacgatattgtaaaaattggagactggaag
ccattgaataattgttcaaagtctgctaattttactgtttcactcaatatttataatctt
gtgcagtcggaagtgtacacagccaatgacgggctggttggaaaagtttatcaactcata
aatggtacattttcaaagctgattccatgtttccttcttccaatcctaaccactcttctc
attgctgagctccgtaaagccaaggatcaccagagaatgctcaattcaactacacggctc
ggaaatttcccggaaacattttcacaaggagttgcgagcacagaaagaaccacggggcta
gtggtatttatgactgtctctacgtttgttattgaagttccaggcggaattgttcgagtt
ttacagtttggatatactgacctgggatactggagacttgccacgtcagttggccagatt
tgcagtttatttttcgtaatacatgcgtctcttcaaggcgtcatattcttcctgatgtca
tc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCCTCTCACTTTTATATTTTATT 2 235 595 Antisense
GTGCAGTCGGAAGTGTACACAGCCA 637 477 715 Antisense
AAAGCTGATTCCATGTTTCCTTCTT 137 125 789 Antisense
TCTTCTCATTGCTGAGCTCCGTAAA 265 617 828 Antisense
TGCTCAATTCAACTACACGGCTCGG 258 581 872 Antisense
ATGACTGTCTCTACGTTTGTTATTG 533 45 964 Antisense
GTTCCAGGCGGAATTGTTCGAGTTT 48 439 991 Antisense
TGACCTGGGATACTGGAGACTTGCC 192 569 1032 Antisense
GACTTGCCACGTCAGTTGGCCAGAT 473 371 1049 Antisense
AATACATGCGTCTCTTCAAGGCGTC 399 171 1092 Antisense
GCGTCATATTCTTCCTGATGTCATC 491 291 1112 Antisense
Sequence Source Affymetrix Proprietary Database