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[184730_at]

Description Y49F6B.6 /REP_DB=WormBase Gene ID /WP=CE22258 /TR=Q9N4U9 /GB=AAF60727.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 80      6grp_total > 71      4grp_total > 36      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 59.4
(0)
A 		48.3
(-3)
A 		70.3
(3)
A 		61.7
(0.7)
P 		22
B 66.8
(-3)
A 		97.1
(3)
P 		66.9
(-3)
P 		76.1
(-1.2)
M 		30
C 56.9
(2.7)
A 		58.4
(3)
P 		25.2
(-3)
M 		56.7
(2.7)
A 		33
avr 61
(-0) 		67.9
(3) 		54.1
(-3) 		64.8
(1.7) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 93.7
(3)
P 		61.6
(-0.3)
M 		86
(2.2)
M 		67.4
(0.3)
P 		83.2
(1.9)
A 		35.6
(-3)
A 		58
B 29.3
(-3)
P 		73.4
(2.8)
P 		62.8
(1.4)
P 		74.6
(3)
P 		71.7
(2.6)
P 		30.2
(-2.9)
A 		45
C 55.7
(-2.1)
P 		123.1
(1.9)
P 		67.9
(-1.4)
M 		142
(3)
P 		41.2
(-3)
A 		48.8
(-2.5)
P 		101
avr 59.6
(-0.7) 		86
(2.1) 		72.2
(0.6) 		94.7
(3) 		65.4
(-0.1) 		38.2
(-3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 21.6
(3)
A 		10.5
(-2.3)
A 		18.4
(1.5)
A 		9
(-3)
P 		13
B 21.3
(1.1)
A 		24
(3)
P 		15.5
(-3)
P 		16.2
(-2.5)
M 		9
C 18.8
(3)
A 		16.8
(1.8)
P 		8.8
(-3)
M 		9.6
(-2.5)
A 		10
avr 20.6
(3) 		17.1
(0.7) 		14.2
(-1.3) 		11.6
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 17.3
(0.1)
P 		21.9
(1.8)
M 		18.7
(0.7)
M 		17.1
(0.1)
P 		25.1
(3)
A 		8.7
(-3)
A 		16
B 10.2
(-3)
P 		24.4
(1.5)
P 		15.2
(-1.4)
P 		19.8
(0)
P 		29.1
(3)
P 		11.2
(-2.7)
A 		19
C 20.6
(-1.2)
P 		37.6
(3)
P 		17.3
(-2)
M 		28.6
(0.8)
P 		13.3
(-3)
A 		16.3
(-2.3)
P 		24
avr 16
(-1.5) 		28
(3) 		17.1
(-1.1) 		21.8
(0.7) 		22.5
(0.9) 		12.1
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184730_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4287
Sequence Type Exemplar sequence
Representative Public ID Y49F6B.6 NCBI
Target Description Y49F6B.6 /REP_DB=WormBase Gene ID /WP=CE22258 /TR=Q9N4U9 /GB=AAF60727.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062154(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062154 NCBI Caenorhabditis elegans Y49F6B.6 (Y49F6B.6) mRNA, complete cds. 11/11 None
SNAP00000021092 ENSEMBL cdna:SNAP chromosome:CEL140:II:3472874:3473402:1 9/11 None
Y49F6B.6 ENSEMBL cdna:known chromosome:CEL140:II:3472874:3473284:1 gene:Y49F6B.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3472872-3473283(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y49F6B.6
Entrez Gene 190081 Entrez gene
SwissProt Q9N4U9 EMBL-EBI
WormBase CE22258 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494555 Y49F6B.6 [Caenorhabditis elegans] gb|AAF60727.1| Hypothetical protein Y49F6B.6 [Caenorhabditis elegans] 4.0E-39
blast NP_494555 Y49F6B.6 [Caenorhabditis elegans] gb|AAF60727.1| Hypothetical protein Y49F6B.6 [Caenorhabditis elegans] 2.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494555.1 1 21-38
Y49F6B.6 1 21-38
SNAP00000021092 1 13-30
Sequence
Target Sequence 
>C. ELEGANS:184730_AT
gaacagctcaggaaagtacagaatctgaaaattgaaaattgccgcatctccaagatgaac
tggctctccatgttcattctacttgctgtaactgccatggccgccagccatggccagcgt
tggttccataagtttcacagaaacccagcttctgacgaagttcatggagatgtttggacc
cagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAGCTCAGGAAAGTACAGAATC 627 349 22 Antisense
TGAAAATTGCCGCATCTCCAAGATG 426 573 54 Antisense
TCTCCAAGATGAACTGGCTCTCCAT 664 609 68 Antisense
TGAACTGGCTCTCCATGTTCATTCT 43 575 77 Antisense
CTCCATGTTCATTCTACTTGCTGTA 648 235 87 Antisense
CTGCCATGGCCGCCAGCCATGGCCA 637 211 113 Antisense
CCATGGCCAGCGTTGGTTCCATAAG 696 271 129 Antisense
GCGTTGGTTCCATAAGTTTCACAGA 606 265 138 Antisense
GTTTCACAGAAACCCAGCTTCTGAC 696 449 153 Antisense
GAAACCCAGCTTCTGACGAAGTTCA 132 357 161 Antisense
GTTCATGGAGATGTTTGGACCCAGG 357 445 181 Antisense
Sequence Source Affymetrix Proprietary Database