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[184729_at]

Description F19F10.8 /REP_DB=WormBase Gene ID /WP=CE09488 /TR=O01523 /GB=AAB52286.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 1.9
(-2.8)
A 		1.4
(-3)
A 		20.4
(3)
A 		2.3
(-2.7)
A 		19
B 2.6
(-2)
A 		1.1
(-3)
A 		8.3
(1.9)
A 		9.9
(3)
A 		9
C 13.9
(-1.5)
A 		25.2
(1.7)
A 		8.7
(-3)
A 		29.7
(3)
A 		21
avr 6.1
(-3) 		9.2
(-0.6) 		12.5
(1.9) 		14
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 2.6
(-2.5)
A 		0.6
(-3)
A 		24
(3)
A 		8.6
(-0.9)
A 		0.8
(-2.9)
A 		6.6
(-1.5)
A 		23
B 10
(-0.7)
A 		21.2
(3)
A 		16.9
(1.6)
A 		3.2
(-3)
A 		4.1
(-2.7)
A 		12.4
(0.1)
A 		18
C 14.7
(-0.8)
A 		2.2
(-3)
A 		27.6
(1.5)
A 		2.4
(-3)
A 		36.4
(3)
A 		8.8
(-1.8)
A 		34
avr 9.1
(-1.5) 		8
(-1.9) 		22.8
(3) 		4.7
(-3) 		13.8
(0) 		9.3
(-1.5) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.7
(-2.5)
A 		0.3
(-3)
A 		5.3
(3)
A 		0.3
(-3)
A 		5
B 0.8
(-1.3)
A 		0.3
(-3)
A 		1.9
(2.3)
A 		2.1
(3)
A 		2
C 4.6
(-0.7)
A 		7.2
(3)
A 		3
(-3)
A 		5
(-0.1)
A 		4
avr 2
(-3) 		2.6
(-0.4) 		3.4
(3) 		2.5
(-0.9) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.5
(-2.6)
A 		0.2
(-3)
A 		5.2
(3)
A 		2.2
(-0.6)
A 		0.2
(-3)
A 		1.6
(-1.3)
A 		5
B 3.5
(-0.5)
A 		7.1
(3)
A 		4.1
(0.1)
A 		0.9
(-3)
A 		1.7
(-2.2)
A 		4.6
(0.6)
A 		6
C 5.5
(-0.3)
A 		0.7
(-2.9)
A 		7
(0.5)
A 		0.5
(-3)
A 		11.8
(3)
A 		2.9
(-1.7)
A 		11
avr 3.2
(-0.1) 		2.7
(-0.9) 		5.4
(3) 		1.2
(-3) 		4.6
(1.9) 		3
(-0.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184729_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12165
Sequence Type Exemplar sequence
Representative Public ID F19F10.8 NCBI
Target Description F19F10.8 /REP_DB=WormBase Gene ID /WP=CE09488 /TR=O01523 /GB=AAB52286.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072550(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072550 NCBI Caenorhabditis elegans F19F10.8 (F19F10.8) mRNA, complete cds. 11/11 None
GENEFINDER00000016040 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7568253:7572982:-1 11/11 None
F19F10.8 ENSEMBL cdna:known chromosome:CEL140:V:7572288:7572982:-1 gene:F19F10.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027543 1/11 Cross Hyb Matching Probes None
R10E12.1c 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7572229-7572983(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19F10.8
Entrez Gene 184690 Entrez gene
SwissProt O01523 EMBL-EBI
WormBase CE36829 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52286 Hypothetical protein F19F10.8 [Caenorhabditis elegans] ref|NP_504951.2| F19F10.8 [Caenorhabditis elegans] 4.0E-87
blast AAB52286 Hypothetical protein F19F10.8 [Caenorhabditis elegans] ref|NP_504951.2| F19F10.8 [Caenorhabditis elegans] 1.0E-85
blast AAB52285 Hypothetical protein F19F10.7 [Caenorhabditis elegans] ref|NP_504950.2| F19F10.7 [Caenorhabditis elegans] 5.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504951.2 1 6-25
F19F10.8 1 6-25
GENEFINDER00000016040 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:184729_AT
ctcattttgctccaaccatgtgtatgtttctgttgagcattctttttgtcttatttaaag
cttcgtattgcacagttcctcaaatgatcataatacaaggcagaattgatgaaaattcag
aaagcgcgtgcgtaccattttatgtcgaagacaaagaattcaatagttgcgtagcgtctt
gtgggaacagtgaaacttgtgtggctattaaatacaagagggaatgtaatcattgccata
aggcagttcttattccagactgcaaaggtatgaaaatggcttataagaataccggagaaa
atatcctttgtcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCATTTTGCTCCAACCATGTGTAT 655 229 32 Antisense
ACCATGTGTATGTTTCTGTTGAGCA 222 85 46 Antisense
GTTGAGCATTCTTTTTGTCTTATTT 38 439 63 Antisense
AAAGCTTCGTATTGCACAGTTCCTC 117 125 88 Antisense
ATTGCACAGTTCCTCAAATGATCAT 420 5 98 Antisense
AAAATTCAGAAAGCGCGTGCGTACC 386 133 143 Antisense
GCGTGCGTACCATTTTATGTCGAAG 607 291 157 Antisense
TAGTTGCGTAGCGTCTTGTGGGAAC 110 635 195 Antisense
GGAACAGTGAAACTTGTGTGGCTAT 464 527 215 Antisense
AAGGCAGTTCTTATTCCAGACTGCA 499 161 271 Antisense
TACCGGAGAAAATATCCTTTGTCCA 209 645 321 Antisense
Sequence Source Affymetrix Proprietary Database