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[184726_at] 7TM chemoreceptor, srab family

Description T20D4.18 /REP_DB=WormBase Gene ID /WP=CE13812 /TR=P91473 /GB=AAB37595.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 05      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 5.6
(0.8)
A 		2.2
(-3)
A 		7.6
(3)
A 		5.4
(0.6)
A 		5
B 6.9
(3)
A 		3.6
(-0.4)
A 		1.1
(-3)
A 		3.5
(-0.5)
A 		6
C 18.7
(-0.5)
A 		1.1
(-3)
A 		3.8
(-2.6)
A 		43.5
(3)
A 		42
avr 10.4
(0.2) 		2.3
(-3) 		4.2
(-2.3) 		17.5
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 17.7
(3)
A 		2.5
(-2.5)
A 		1.1
(-3)
A 		2
(-2.7)
A 		1.7
(-2.8)
A 		1.5
(-2.9)
A 		17
B 8.5
(3)
A 		5.4
(-0.1)
A 		3.1
(-2.4)
A 		5.3
(-0.2)
A 		3.7
(-1.8)
A 		2.5
(-3)
A 		6
C 2.9
(-0.1)
A 		3.5
(0.7)
A 		5.2
(3)
A 		3.8
(1.1)
A 		0.8
(-3)
A 		1.4
(-2.2)
A 		4
avr 9.7
(3) 		3.8
(-1.5) 		3.1
(-2) 		3.7
(-1.6) 		2.1
(-2.8) 		1.8
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2
(3)
A 		0.5
(-3)
A 		2
(3)
A 		0.8
(-1.8)
A 		2
B 2.2
(3)
A 		0.9
(-1.1)
A 		0.3
(-3)
A 		0.7
(-1.7)
A 		2
C 6.2
(2.1)
A 		0.3
(-3)
A 		1.3
(-2.1)
A 		7.3
(3)
A 		7
avr 3.5
(3) 		0.6
(-3) 		1.2
(-1.8) 		2.9
(1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 3.3
(3)
A 		0.9
(-1.6)
A 		0.2
(-3)
A 		0.5
(-2.4)
A 		0.5
(-2.4)
A 		0.4
(-2.6)
A 		3
B 3
(3)
A 		1.8
(-0.3)
A 		0.8
(-3)
A 		1.4
(-1.4)
A 		1.5
(-1.1)
A 		0.9
(-2.7)
A 		2
C 1.1
(1.8)
A 		1.1
(1.8)
A 		1.3
(3)
A 		0.8
(0)
A 		0.3
(-3)
A 		0.5
(-1.8)
A 		1
avr 2.5
(3) 		1.3
(-0.8) 		0.8
(-2.4) 		0.9
(-2.1) 		0.8
(-2.4) 		0.6
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184726_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14887
Sequence Type Exemplar sequence
Representative Public ID T20D4.18 NCBI
Target Description T20D4.18 /REP_DB=WormBase Gene ID /WP=CE13812 /TR=P91473 /GB=AAB37595.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071558(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071558 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-21) (srab-21) mRNA, complete cds. 11/11 None
GENEFINDER00000008857 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3422568:3424267:-1 11/11 None
T20D4.18 ENSEMBL cdna:known chromosome:CEL140:V:3422775:3424267:-1 gene:T20D4.18 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008853 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3423187-3424237(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srab family
Gene Symbol srab-21
Ensembl T20D4.18
Entrez Gene 188653 Entrez gene
SwissProt P91473 EMBL-EBI
WormBase CE36508 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37595 Serpentine receptor, class ab (class a-like) protein 21 [Caenorhabditis elegans] ref|NP_503959.2| Serpentine Receptor, class AB (class A-like) family member (srab-21) [Caenorhabditis elegans] 1.0E-169
blast AAB37596 Serpentine receptor, class ab (class a-like) protein 22 [Caenorhabditis elegans] ref|NP_503960.2| Serpentine Receptor, class AB (class A-like) family member (srab-22) [Caenorhabditis elegans] 1.0E-142
blast AAB37597 Serpentine receptor, class ab (class a-like) protein 20 [Caenorhabditis elegans] ref|NP_503961.2| Serpentine Receptor, class AB (class A-like) family member (srab-20) [Caenorhabditis elegans] 1.0E-141
blast AAB37596 Serpentine receptor, class ab (class a-like) protein 22 [Caenorhabditis elegans] ref|NP_503960.2| Serpentine Receptor, class AB (class A-like) family member (srab-22) [Caenorhabditis elegans] 1.0E-141
blast AAB37597 Serpentine receptor, class ab (class a-like) protein 20 [Caenorhabditis elegans] ref|NP_503961.2| Serpentine Receptor, class AB (class A-like) family member (srab-20) [Caenorhabditis elegans] 1.0E-140
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503959.2 7 24-46,53-75,110-129,142-164,184-206,243-265,275-297
T20D4.18 7 24-46,53-75,110-129,142-164,184-206,243-265,275-297
GENEFINDER00000008857 9 24-46,53-75,110-129,142-164,184-206,243-265,275-297,331-349,364-383
Sequence
Target Sequence 
>C. ELEGANS:184726_AT
gatatggctgctagcacaattcgatgttttgtgttccgatcgcagtatttatttggaatt
cgattagttagcgcaacaacagtgccttttgtcattgaaagatacattgccacagttaga
tcaaaaagttatgagcattccggatgcacattaggtatacttatggcgatattgcagctc
tcaataggatttttctcgacagctgtttcattctccactttttcattcacggatcctttt
atggattattgtatttcttttaaaattggagtctttggcagtactgaagttattcactcg
ttgggagttgcaactcaaatttttggaagaatattattcgagtacatgtttcggaagaac
gagaagctccgatcgaaacgattaacgtcatcactttcaaatcgatactctctagagcaa
aatctaaaatctacgagaaccttaaaagttttcgctaacttgcaatcaatttttctcact
gcccagatgactattttactat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATGGCTGCTAGCACAATTCGAT 330 425 262 Antisense
GTTTTGTGTTCCGATCGCAGTATTT 89 449 287 Antisense
GCGCAACAACAGTGCCTTTTGTCAT 368 287 332 Antisense
TTTTCTCGACAGCTGTTTCATTCTC 25 677 452 Antisense
CATTCTCCACTTTTTCATTCACGGA 50 217 470 Antisense
AATTGGAGTCTTTGGCAGTACTGAA 206 177 525 Antisense
GAACGAGAAGCTCCGATCGAAACGA 636 347 618 Antisense
AAACGATTAACGTCATCACTTTCAA 319 127 637 Antisense
GTTTTCGCTAACTTGCAATCAATTT 240 449 709 Antisense
TCAATTTTTCTCACTGCCCAGATGA 389 633 727 Antisense
ACTGCCCAGATGACTATTTTACTAT 156 99 739 Antisense
Sequence Source Affymetrix Proprietary Database