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[184724_at]

Description F01F1.13 /REP_DB=WormBase Gene ID /WP=CE01226 /TR=Q19092 /GB=AAC46648.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 57.8
(-1)
A 		91.8
(1.2)
A 		28.2
(-3)
A 		118.8
(3)
A 		91
B 73.8
(-2.4)
A 		147.7
(3)
A 		65.7
(-3)
A 		65.9
(-3)
A 		82
C 63.6
(-2.9)
A 		132.6
(3)
A 		62
(-3)
A 		83.9
(-1.1)
A 		71
avr 65.1
(-1.9) 		124
(3) 		52
(-3) 		89.5
(0.1) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 95
(2.7)
A 		89.6
(2.4)
A 		98.9
(3)
A 		71.9
(1.3)
A 		5.7
(-3)
A 		58.8
(0.4)
A 		93
B 61.2
(-1.5)
A 		119.5
(3)
P 		54.5
(-2)
A 		59.3
(-1.6)
A 		40.9
(-3)
A 		44.7
(-2.7)
A 		79
C 49.8
(-1)
A 		134.4
(3)
P 		36.9
(-1.7)
A 		8.7
(-3)
A 		40.5
(-1.5)
A 		46.7
(-1.2)
A 		126
avr 68.7
(-0.2) 		114.5
(3) 		63.4
(-0.6) 		46.6
(-1.8) 		29
(-3) 		50.1
(-1.5) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 21
(3)
A 		19.9
(2.5)
A 		7.4
(-3)
A 		17.4
(1.4)
A 		14
B 23.5
(-0.5)
A 		36.5
(3)
A 		15.2
(-2.7)
A 		14.1
(-3)
A 		22
C 21
(-1.3)
A 		38.1
(3)
A 		21.6
(-1.1)
A 		14.1
(-3)
A 		24
avr 21.8
(-0.5) 		31.5
(3) 		14.7
(-3) 		15.2
(-2.8) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 17.5
(0.1)
A 		31.9
(3)
A 		21.5
(0.9)
A 		18.2
(0.3)
A 		1.7
(-3)
A 		14.3
(-0.5)
A 		30
B 21.3
(-1.2)
A 		39.8
(3)
P 		13.2
(-3)
A 		15.7
(-2.4)
A 		16.6
(-2.2)
A 		16.7
(-2.2)
A 		27
C 18.5
(-0.4)
A 		41
(3)
P 		9.4
(-1.8)
A 		1.7
(-3)
A 		13.1
(-1.3)
A 		15.6
(-0.9)
A 		39
avr 19.1
(-1.1) 		37.6
(3) 		14.7
(-2.1) 		11.9
(-2.7) 		10.5
(-3) 		15.5
(-1.9) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184724_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6503
Sequence Type Exemplar sequence
Representative Public ID F01F1.13 NCBI
Target Description F01F1.13 /REP_DB=WormBase Gene ID /WP=CE01226 /TR=Q19092 /GB=AAC46648.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065871(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065871 NCBI Caenorhabditis elegans F01F1.13 (F01F1.13) mRNA, complete cds. 11/11 None
GENEFINDER00000009943 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5876737:5878431:-1 11/11 None
F01F1.13 ENSEMBL cdna:known chromosome:CEL140:III:5877117:5878368:-1 gene:F01F1.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009928 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5877083-5878367(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F01F1.13
Entrez Gene 184064 Entrez gene
SwissProt Q19092 EMBL-EBI
WormBase CE32350 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46648 Hypothetical protein F01F1.13 [Caenorhabditis elegans] ref|NP_498272.2| F01F1.13 [Caenorhabditis elegans] 1.0E-116
blast AAC46648 Hypothetical protein F01F1.13 [Caenorhabditis elegans] ref|NP_498272.2| F01F1.13 [Caenorhabditis elegans] 1.0E-107
blast CAE64372 Hypothetical protein CBG09059 [Caenorhabditis briggsae] 1.0E-106
blast CAE64372 Hypothetical protein CBG09059 [Caenorhabditis briggsae] 1.0E-64
blast XP_684379 PREDICTED: similar to MGC68835 protein [Danio rerio] 1.0E-25
blast XP_684379 PREDICTED: similar to MGC68835 protein [Danio rerio] 2.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 8.1E-6
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 8.1E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000009943 1 264-286
Sequence
Target Sequence 
>C. ELEGANS:184724_AT
gcatccgtccaggaggttggtcaacgtggtcaaaatggtcgaaatgtagagaaggtatcc
gaaaaagaagacgaacgtgtaataatcctttaccaattggtaccacttgttctggccaga
aagttgagaagcaatcttgtgcaatttcttcaaatgtaccggagtatctttttggatcct
ggacatcctggaatccatggtctcgatgcgattgtgatcgtagcctgaggatacgaactc
ggcactgcaaaggtaattcctgcgagggatgtgacaaggattacgaagattgccgcccag
atgagtgtccaattagtaaaaaatggtccgaatggacagattgggtgaattatggaattg
agcaagtacggttttcagcctggtgttcgtcatcaaacgtggcgaatactgaaccaactg
gtctgaatggcatatgcatccaggagttgcataccgttatcgtcttcttcacaactcttc
tatttccatcgaacaccatctcttatcaagattcacgtcatcatgtcttcccttgcattt
tgcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCCGTCCAGGAGGTTGGTCAAC 455 305 167 Antisense
TTGGTACCACTTGTTCTGGCCAGAA 63 705 263 Antisense
GACATCCTGGAATCCATGGTCTCGA 62 371 348 Antisense
GAGGATACGAACTCGGCACTGCAAA 471 403 393 Antisense
CCGCCCAGATGAGTGTCCAATTAGT 310 263 459 Antisense
GAGCAAGTACGGTTTTCAGCCTGGT 596 389 526 Antisense
TTTTCAGCCTGGTGTTCGTCATCAA 187 675 538 Antisense
CAGGAGTTGCATACCGTTATCGTCT 704 207 607 Antisense
TCACAACTCTTCTATTTCCATCGAA 220 629 635 Antisense
CATCGAACACCATCTCTTATCAAGA 574 211 653 Antisense
CATGTCTTCCCTTGCATTTTGCAAT 171 211 688 Antisense
Sequence Source Affymetrix Proprietary Database