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[184723_at]

Description F19F10.7 /REP_DB=WormBase Gene ID /WP=CE09487 /TR=O01522 /GB=AAB52285.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 27.2
(-3)
A 		59.3
(3)
A 		56.3
(2.4)
A 		35.2
(-1.5)
A 		32
B 5.9
(-2)
A 		16.2
(3)
A 		5.2
(-2.3)
A 		3.8
(-3)
A 		12
C 27.5
(-1.1)
A 		80.5
(3)
A 		49.2
(0.6)
A 		3
(-3)
A 		78
avr 20.2
(-2) 		52
(3) 		36.9
(0.6) 		14
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 7.2
(-1.4)
A 		8.2
(-1.1)
A 		21.7
(3)
A 		10.4
(-0.4)
A 		1.9
(-3)
A 		3.9
(-2.4)
A 		20
B 20.6
(-1.2)
A 		56.9
(3)
A 		4.9
(-3)
A 		25.6
(-0.6)
A 		25.5
(-0.6)
A 		8.1
(-2.6)
A 		52
C 11.5
(-0.3)
A 		9.9
(-0.8)
A 		3.4
(-2.7)
A 		2.4
(-3)
A 		22.6
(3)
A 		8
(-1.3)
A 		20
avr 13.1
(-0.9) 		25
(3) 		10
(-1.9) 		12.8
(-1) 		16.7
(0.3) 		6.7
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 9.9
(0)
A 		12.9
(1.9)
A 		14.7
(3)
A 		5.1
(-3)
A 		10
B 1.9
(-0.9)
A 		4
(3)
A 		1.2
(-2.3)
A 		0.8
(-3)
A 		3
C 9.1
(-0.7)
A 		23.2
(3)
A 		17.1
(1.4)
A 		0.5
(-3)
A 		23
avr 7
(-0.4) 		13.4
(3) 		11
(1.7) 		2.1
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.3
(-2)
A 		2.9
(0.4)
A 		4.7
(3)
A 		2.6
(-0.1)
A 		0.6
(-3)
A 		0.9
(-2.6)
A 		4
B 7.2
(-1)
A 		19
(3)
A 		1.2
(-3)
A 		6.8
(-1.1)
A 		10.4
(0.1)
A 		3
(-2.4)
A 		18
C 4.2
(0.3)
A 		3
(-0.8)
A 		0.9
(-2.6)
A 		0.5
(-3)
A 		7.3
(3)
A 		2.7
(-1.1)
A 		7
avr 4.2
(-1) 		8.3
(3) 		2.3
(-2.9) 		3.3
(-1.9) 		6.1
(0.8) 		2.2
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184723_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12046
Sequence Type Exemplar sequence
Representative Public ID F19F10.7 NCBI
Target Description F19F10.7 /REP_DB=WormBase Gene ID /WP=CE09487 /TR=O01522 /GB=AAB52285.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072549(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072549 NCBI Caenorhabditis elegans F19F10.7 (F19F10.7) mRNA, complete cds. 11/11 None
F19F10.7 ENSEMBL cdna:known chromosome:CEL140:V:7568824:7569651:-1 gene:F19F10.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016040 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7568824-7569757(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19F10.7
Entrez Gene 184689 Entrez gene
SwissProt O01522 EMBL-EBI
WormBase CE36828 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52285 Hypothetical protein F19F10.7 [Caenorhabditis elegans] ref|NP_504950.2| F19F10.7 [Caenorhabditis elegans] 1.0E-110
Sequence
Target Sequence 
>C. ELEGANS:184723_AT
tcaaccactacacgccaaaaacaatgtccagacaaaagatttaccattttcgatgaaaat
tggtgttttctgatagtttttaatagtgtcataaactcggaagaaaaagctaaaatcttg
tgcaacaactccaatgctcaattaagtggtccagagactgacgaagagttggtggccata
atgaattcaacaatagattatattactagtgaacatcaaggaaatgattttgccctttgg
gttgatggaatcatttcctggcctgtaaagtttaatgtcatccatgttctaaaaacattt
ggaagttatataacttcttccgatcctcacttggtcaagaagtcgggctaccattttctg
aatgaggacgcatacagtttgatgaaattacctgatttaggaaataataggttttgcctt
caactcacaaatgggcgtgcagaactaggaacgatttcaattgtaaattgctcgtttccc
atctccaataaattggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACCACTACACGCCAAAAACAAT 532 631 31 Antisense
TCTTGTGCAACAACTCCAATGCTCA 364 619 146 Antisense
GACTGACGAAGAGTTGGTGGCCATA 472 373 186 Antisense
GGAAATGATTTTGCCCTTTGGGTTG 405 497 250 Antisense
GAATCATTTCCTGGCCTGTAAAGTT 554 325 278 Antisense
AAGTTTAATGTCATCCATGTTCTAA 683 155 298 Antisense
AGTTATATAACTTCTTCCGATCCTC 57 63 334 Antisense
AAGTCGGGCTACCATTTTCTGAATG 304 141 370 Antisense
AATAGGTTTTGCCTTCAACTCACAA 492 171 436 Antisense
AATTGTAAATTGCTCGTTTCCCATC 190 177 489 Antisense
CGTTTCCCATCTCCAATAAATTGGC 350 247 503 Antisense
Sequence Source Affymetrix Proprietary Database