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[184721_s_at]

Description ZK1127.4 /REP_DB=WormBase Gene ID /WP=CE07643 /TR=Q23402 /GB=AAB93435.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 83      6grp_total > 66      4grp_total > 59      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 428
1 2 3 4 range
A 632
(-1.4)
P 		899
(3)
P 		657.7
(-0.9)
P 		531.4
(-3)
P 		368
B 527.8
(-1.7)
P 		666.6
(1.5)
P 		731.6
(3)
P 		471.5
(-3)
P 		260
C 729.2
(1.4)
P 		536
(-2.3)
P 		813.4
(3)
P 		496.6
(-3)
P 		317
avr 629.7
(0.3) 		700.5
(2.1) 		734.2
(3) 		499.8
(-3) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 453
1 2 3 4 5 6 range
A 464.8
(-0.5)
P 		410.4
(-2.3)
P 		535.2
(2)
P 		434.8
(-1.5)
P 		390.7
(-3)
P 		565.5
(3)
P 		175
B 433.1
(-2.1)
P 		480.5
(-1.5)
P 		623.4
(0.4)
P 		365.8
(-3)
P 		415
(-2.3)
P 		814.7
(3)
P 		449
C 362
(-3)
P 		478.5
(-0.6)
P 		379.4
(-2.6)
P 		384.3
(-2.5)
P 		421.9
(-1.8)
P 		653.1
(3)
P 		291
avr 420
(-2.5) 		456.5
(-1.7) 		512.7
(-0.5) 		395
(-3) 		409.2
(-2.7) 		677.8
(3) 		283
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 230.1
(3)
P 		195.2
(1.6)
P 		171.9
(0.7)
P 		77.8
(-3)
P 		152
B 168.3
(2.9)
P 		164.6
(2.6)
P 		169.5
(3)
P 		100.5
(-3)
P 		69
C 241.4
(1.7)
P 		154.1
(-0.9)
P 		283.5
(3)
P 		83.7
(-3)
P 		200
avr 213.3
(3) 		171.3
(1) 		208.3
(2.8) 		87.3
(-3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 85.7
(-3)
P 		145.9
(3)
P 		116.6
(0.1)
P 		110.3
(-0.5)
P 		117.9
(0.2)
P 		137.7
(2.2)
P 		60
B 150.7
(-1.4)
P 		159.9
(-1.2)
P 		151.4
(-1.4)
P 		96.9
(-3)
P 		168.6
(-0.9)
P 		303.8
(3)
P 		207
C 134.2
(-0.6)
P 		146
(-0.1)
P 		96.6
(-2.2)
P 		77.3
(-3)
P 		136.5
(-0.5)
P 		218.6
(3)
P 		141
avr 123.5
(-1.6) 		150.6
(-0.3) 		121.5
(-1.7) 		94.8
(-3) 		141
(-0.8) 		220
(3) 		125
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184721_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5579
Sequence Type Exemplar sequence
Representative Public ID ZK1127.4 NCBI
Target Description ZK1127.4 /REP_DB=WormBase Gene ID /WP=CE07643 /TR=Q23402 /GB=AAB93435.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063046(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063046 NCBI Caenorhabditis elegans ZK1127.4 (ZK1127.4) mRNA, complete cds. 11/11 A 
SNAP00000033592 ENSEMBL cdna:SNAP chromosome:CEL140:II:7053880:7055027:1 11/11 None
GENEFINDER00000033610 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7053880:7055027:1 11/11 None
ZK1127.4 ENSEMBL cdna:known chromosome:CEL140:II:7053877:7055057:1 gene:ZK1127.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7053875-7055023(+) 89.24 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1127.4
Entrez Gene 174153 Entrez gene
SwissProt Q23402 EMBL-EBI
WormBase CE07643 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93435 Hypothetical protein ZK1127.4 [Caenorhabditis elegans] ref|NP_495447.1| ZK1127.4 [Caenorhabditis elegans] 1.0E-141
blast CAE66021 Hypothetical protein CBG11215 [Caenorhabditis briggsae] 1.0E-112
blast AAL39431 GM14202p [Drosophila melanogaster] 7.0E-13
Sequence
Target Sequence 
>C. ELEGANS:184721_S_AT
aaaagaagcgagctgctgcggctgcactagcaaatgctgaaatcgaattcgacaatccag
aagatagagttctatttgagatcaaagaaggaaaagaaattcatttcgactatccagttc
acatggatgtagagcctggaagtaaattccacagtaccgagaaggatggaaagaaatgga
atccattccgtcgccttgtcatcatggatgacaaacgtttcgatgcatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGAAGCGAGCTGCTGCGGCTGC 460 129 800 Antisense
CTGCTGCGGCTGCACTAGCAAATGC 339 237 812 Antisense
GGCTGCACTAGCAAATGCTGAAATC 166 539 819 Antisense
AATCGAATTCGACAATCCAGAAGAT 503 167 840 Antisense
GATAGAGTTCTATTTGAGATCAAAG 282 425 862 Antisense
AATTCATTTCGACTATCCAGTTCAC 178 177 897 Antisense
CATTTCGACTATCCAGTTCACATGG 465 215 901 Antisense
TTCACATGGATGTAGAGCCTGGAAG 708 685 917 Antisense
GGAAGTAAATTCCACAGTACCGAGA 82 525 937 Antisense
TCCGTCGCCTTGTCATCATGGATGA 163 595 986 Antisense
GATGACAAACGTTTCGATGCATTTT 197 411 1006 Antisense
Sequence Source Affymetrix Proprietary Database