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[184720_at]

Description ZK1127.4 /REP_DB=WormBase Gene ID /WP=CE07643 /TR=Q23402 /GB=AAB93435.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 90      6grp_total > 67      4grp_total > 39      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 240.9
(3)
P 		139
(-3)
P 		141.8
(-2.8)
P 		178
(-0.7)
P 		102
B 195.8
(3)
P 		166
(-1.3)
P 		179.2
(0.6)
P 		153.8
(-3)
P 		42
C 212.8
(-2.1)
P 		207.6
(-3)
P 		241.6
(3)
P 		231.2
(1.2)
P 		34
avr 216.5
(3) 		170.9
(-3) 		187.5
(-0.8) 		187.7
(-0.8) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 91.8
(-3)
P 		147.4
(2)
P 		154.9
(2.7)
P 		148.8
(2.2)
P 		114.8
(-0.9)
P 		158.1
(3)
P 		66
B 130.5
(-1.9)
P 		131.5
(-1.9)
P 		136
(-1.6)
P 		114.2
(-2.7)
P 		108.8
(-3)
P 		228.3
(3)
P 		120
C 162.6
(-0.4)
P 		167.7
(-0.2)
P 		138.9
(-1.7)
P 		114.8
(-3)
P 		166.4
(-0.2)
P 		226.6
(3)
P 		112
avr 128.3
(-2.8) 		148.9
(-1.2) 		143.3
(-1.7) 		125.9
(-3) 		130
(-2.7) 		204.3
(3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 87.7
(3)
P 		30.2
(-2.6)
P 		37.1
(-1.9)
P 		26.1
(-3)
P 		62
B 62.4
(3)
P 		41
(-1.3)
P 		41.5
(-1.2)
P 		32.8
(-3)
P 		30
C 70.5
(1.2)
P 		59.7
(-0.3)
P 		84.2
(3)
P 		39
(-3)
P 		45
avr 73.5
(3) 		43.6
(-1.4) 		54.3
(0.2) 		32.6
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 16.9
(-3)
P 		52.4
(3)
P 		33.7
(-0.2)
P 		37.7
(0.5)
P 		34.6
(-0)
P 		38.5
(0.7)
P 		36
B 45.4
(-1.3)
P 		43.8
(-1.5)
P 		33
(-2.7)
P 		30.2
(-3)
P 		44.2
(-1.5)
P 		85.1
(3)
P 		55
C 60.3
(1.2)
P 		51.2
(0.2)
P 		35.4
(-1.6)
P 		23.1
(-3)
P 		53.9
(0.5)
P 		75.9
(3)
P 		53
avr 40.9
(-1.2) 		49.1
(0.1) 		34
(-2.4) 		30.3
(-3) 		44.2
(-0.7) 		66.5
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184720_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5579
Sequence Type Exemplar sequence
Representative Public ID ZK1127.4 NCBI
Target Description ZK1127.4 /REP_DB=WormBase Gene ID /WP=CE07643 /TR=Q23402 /GB=AAB93435.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063046(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063046 NCBI Caenorhabditis elegans ZK1127.4 (ZK1127.4) mRNA, complete cds. 11/11 A 
SNAP00000033592 ENSEMBL cdna:SNAP chromosome:CEL140:II:7053880:7055027:1 11/11 None
GENEFINDER00000033610 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7053880:7055027:1 11/11 None
ZK1127.4 ENSEMBL cdna:known chromosome:CEL140:II:7053877:7055057:1 gene:ZK1127.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7053875-7055023(+) 89.24 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1127.4
Entrez Gene 174153 Entrez gene
SwissProt Q23402 EMBL-EBI
WormBase CE07643 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93435 Hypothetical protein ZK1127.4 [Caenorhabditis elegans] ref|NP_495447.1| ZK1127.4 [Caenorhabditis elegans] 1.0E-141
blast CAE66021 Hypothetical protein CBG11215 [Caenorhabditis briggsae] 1.0E-112
blast AAL39431 GM14202p [Drosophila melanogaster] 7.0E-13
Sequence
Target Sequence 
>C. ELEGANS:184720_AT
gatgctccaaagtttatcaaagacttattcacatatgttttgaatcgtgcaaagaaagga
gctcctactgaaatttacaagaaaattgaagaaattcaagtttctggtgatggtaaatcg
gcgttgtttgtcaacgaaagacttctcaattttccgactattgtcgttcctcaaatcttt
ggaagcattcgtgaagatttgtccggctttgaaacgaaatataaaactatcatctacata
cagaaactgcgcattgttgaaactgatggatcagaagcaaaagttggcgccagctcaaac
ggatctagtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCTCCAAAGTTTATCAAAGACT 472 413 451 Antisense
AAGGAGCTCCTACTGAAATTTACAA 125 161 506 Antisense
GATGGTAAATCGGCGTTGTTTGTCA 605 407 559 Antisense
AAGACTTCTCAATTTTCCGACTATT 537 153 588 Antisense
TTTTCCGACTATTGTCGTTCCTCAA 432 675 600 Antisense
TCGTTCCTCAAATCTTTGGAAGCAT 484 603 614 Antisense
GCATTCGTGAAGATTTGTCCGGCTT 49 309 635 Antisense
GATTTGTCCGGCTTTGAAACGAAAT 234 427 646 Antisense
GAAACTGCGCATTGTTGAAACTGAT 568 357 693 Antisense
GAAGCAAAAGTTGGCGCCAGCTCAA 330 339 724 Antisense
GCGCCAGCTCAAACGGATCTAGTGG 130 287 737 Antisense
Sequence Source Affymetrix Proprietary Database