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[184719_at] 7TM chemoreceptor, srx family

Description F35F10.8 /REP_DB=WormBase Gene ID /WP=CE09933 /TR=Q9GYT9 /GB=AAF99934.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 04      6grp_cgc > 86      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 7
(-2.8)
A 		4.3
(-3)
A 		4.1
(-3)
A 		77.9
(3)
A 		74
B 15.1
(0.7)
A 		7.7
(-1.8)
A 		21.8
(3)
A 		4.1
(-3)
A 		18
C 17.9
(3)
A 		6.3
(-1.6)
A 		2.7
(-3)
A 		10.3
(0)
A 		15
avr 13.3
(-1.3) 		6.1
(-3) 		9.5
(-2.2) 		30.8
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 4.8
(-2.4)
A 		3.5
(-2.7)
A 		7.4
(-1.7)
A 		2.3
(-3)
A 		26.7
(3)
A 		4.4
(-2.5)
A 		24
B 8.3
(2.8)
A 		1.8
(-2.4)
A 		8.5
(3)
A 		8.5
(3)
A 		2.7
(-1.7)
A 		1.1
(-3)
A 		7
C 5
(-2.3)
A 		4.1
(-2.5)
A 		2.2
(-3)
A 		26.7
(3)
A 		2.6
(-2.9)
A 		5.2
(-2.3)
A 		25
avr 6
(-1.1) 		3.1
(-3) 		6
(-1.1) 		12.5
(3) 		10.7
(1.9) 		3.6
(-2.7) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.5
(-2.1)
A 		0.9
(-3)
A 		1.1
(-2.9)
A 		11.4
(3)
A 		11
B 4.8
(2.6)
A 		1.9
(-1.6)
A 		5.1
(3)
A 		0.9
(-3)
A 		4
C 5.9
(3)
A 		1.8
(-1.9)
A 		0.9
(-3)
A 		1.7
(-2)
A 		5
avr 4.4
(2.4) 		1.5
(-3) 		2.4
(-1.3) 		4.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.9
(-2.8)
A 		1.3
(-2.4)
A 		1.6
(-2.2)
A 		0.6
(-3)
A 		8.1
(3)
A 		1.1
(-2.6)
A 		8
B 2.9
(3)
A 		0.6
(-2.5)
A 		2.1
(1.1)
A 		2.2
(1.3)
A 		1.1
(-1.3)
A 		0.4
(-3)
A 		3
C 1.9
(-1.4)
A 		1.3
(-2.1)
A 		0.6
(-3)
A 		5.4
(3)
A 		0.8
(-2.8)
A 		1.7
(-1.6)
A 		5
avr 1.9
(-0.8) 		1.1
(-3) 		1.4
(-2.2) 		2.7
(1.4) 		3.3
(3) 		1.1
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184719_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15470
Sequence Type Exemplar sequence
Representative Public ID F35F10.8 NCBI
Target Description F35F10.8 /REP_DB=WormBase Gene ID /WP=CE09933 /TR=Q9GYT9 /GB=AAF99934.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071511(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071511 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-122) (srx-122) mRNA, complete cds. 11/11 None
GENEFINDER00000011256 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3295934:3301824:-1 11/11 None
F35F10.8 ENSEMBL cdna:known chromosome:CEL140:V:3295934:3297690:-1 gene:F35F10.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011244 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3295696-3296662(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-122
Ensembl F35F10.8
Entrez Gene 185313 Entrez gene
SwissProt Q9GYT9 EMBL-EBI
WormBase CE36542 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99934 Serpentine receptor, class x protein 122 [Caenorhabditis elegans] ref|NP_503912.2| Serpentine Receptor, class X family member (srx-122) [Caenorhabditis elegans] 1.0E-180
blast AAF99934 Serpentine receptor, class x protein 122 [Caenorhabditis elegans] ref|NP_503912.2| Serpentine Receptor, class X family member (srx-122) [Caenorhabditis elegans] 1.0E-179
blast CAB04431 Hypothetical protein F49C5.2 [Caenorhabditis elegans] ref|NP_496677.2| Serpentine Receptor, class X family member (srx-120) [Caenorhabditis elegans] 1.0E-168
blast CAB04431 Hypothetical protein F49C5.2 [Caenorhabditis elegans] ref|NP_496677.2| Serpentine Receptor, class X family member (srx-120) [Caenorhabditis elegans] 1.0E-167
blast AAC27094 Serpentine receptor, class x protein 121 [Caenorhabditis elegans] ref|NP_503939.1| Serpentine Receptor, class X family member (srx-121) [Caenorhabditis elegans] 1.0E-163
blast AAC27094 Serpentine receptor, class x protein 121 [Caenorhabditis elegans] ref|NP_503939.1| Serpentine Receptor, class X family member (srx-121) [Caenorhabditis elegans] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 2.9E-91
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 7.1
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503912.2 7 26-48,55-77,92-114,135-157,188-210,233-255,265-287
F35F10.8 7 26-48,55-77,92-114,135-157,188-210,233-255,265-287
GENEFINDER00000011256 15 15-36,48-70,85-107,180-202,234-253,266-288,303-322,343-360,375-397,404-426,441-463,484-506,537-559,582-604,614-636
Sequence
Target Sequence 
>C. ELEGANS:184719_AT
tatcgcggtattttcctttgctgtgctacttccagaaggctgtcactacctattcaaccg
tgactatcttggatggattggggaagtgacaccgtgcacaaaagtggctcaggagacatt
tttcattatcatggttggcgttactgctgcgacaactttttgcagtgttctgctgtttat
caagttggttatgcattcgcccgactctcatgtttccaacgcacaactagcgtatcgcca
caagaaaaatagaagactgataattcaagcaattgtgcaaagcatcctcattatagtcga
ctcacttaactctacaatcacttacaacatgtttccaaacttattttttcaattcattac
tctctcgttttcaatggtgtttttaagaaccgtggaaggatttgtggtgttttctatcaa
tacctctattaacgccgcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCGCGGTATTTTCCTTTGCTGTG 356 657 45 Antisense
GAAGGCTGTCACTACCTATTCAACC 501 333 79 Antisense
TACCTATTCAACCGTGACTATCTTG 28 647 91 Antisense
GGATTGGGGAAGTGACACCGTGCAC 571 505 119 Antisense
GACACCGTGCACAAAAGTGGCTCAG 667 365 132 Antisense
GTGGCTCAGGAGACATTTTTCATTA 1 493 148 Antisense
ATCATGGTTGGCGTTACTGCTGCGA 151 29 172 Antisense
CAAGTTGGTTATGCATTCGCCCGAC 692 183 225 Antisense
TGCAAAGCATCCTCATTATAGTCGA 640 575 320 Antisense
ATCACTTACAACATGTTTCCAAACT 650 25 361 Antisense
TCAATACCTCTATTAACGCCGCAGT 456 633 461 Antisense
Sequence Source Affymetrix Proprietary Database